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The map label for this gene is 159897675

Identifier: 159897675

GI number: 159897675

Start: 1312730

End: 1314370

Strand: Reverse

Name: 159897675

Synonym: Haur_1146

Alternate gene names: NA

Gene position: 1314370-1312730 (Counterclockwise)

Preceding gene: 159897676

Following gene: 159897674

Centisome position: 20.71

GC content: 50.94

Gene sequence:

>1641_bases
ATGGTTGCTTTGTTGAGAAGAGTCGTTTTCCTACCTTATAACTTGGAGGTGGCCATGAACATTGTTCGCCGCCTGTTTGC
TCGCACGCCTGATGCAGCACATGGGCTTAACCACGAGGGCTTCCCTACCTATCAACGCAGTTTGGCTGAACGGTATATGC
AAACTTTGTTGACCAATACCATTGGCTCAACCTTTTACGCCTCGCAAGGTAGCAATTATGCCTTGGCCTTGGAGTTGCAT
CAAGCCATGTTAGCCCATAACCCACTCTTTGCTGCAAAAGCCTTAGTGTATGCTCGCGAACAAGGAACCATGCGCCTTCA
GCCAATTATCGGCTTGGTTGTGCTATCAACTGTCGATTTGGGCTTGTTTCACCTAATATTCAAGCGCATTATTCTAACGC
CAGGCGATTTGCAAGATTTTGTGCAAATTGTGCGTTCGCGTCAGATTCGGCCTGGTATGGGTCGGGCAATCAAGCAAACA
ATCAATGATTGGTTGCTTAACCTGAGCGAATATCACGTAATTAAATATGGTGGCACGAATGCAGGCAGCATGACCCTACG
CGATGTGCTACGCCTAACGCGTCCGCAACCTATCGATGATCGTACTAATGCTTTGTTCAGTTATTTGATCGATCGTGAGC
GCTGGCGCACAACTTGGGCTGAGCAAGCATCCACGCTGTTGCCGCAAATCGCAGCGGTCGAGCAACTCAAGCGCACGAGC
GATCCGACTGAGCAGCGAGCGTTGGTTGAGGCTGGTCGTCTGCCCTACGAAATTGTCACAGGTACGGGCAAGCCAGATTT
GGCCATGTGGCGAACGTTGATCGAGCAAATGCCCTATTTGGCCTTGCTACGCAATTTGGCTAGCCTACAACGAGCAGGTG
TGTTCCACGATGCGGCGATGATTGAGTATGTGGTTGGGCGTTTGGGCGACCTTGAGGCCTTGCGCCGCGCCAAGATTTTG
CCCTTCCGTTTGCACGCAGCTTGGTTGGCCTTCACGCCACTAAGCGAGCAGGAAAAGCTGATTCAGCAAACGCTTGAGCA
GATGATCGAAATGGCCTTCGTCAACATGCCCGAAATTCCTGGGCGGGTCGTGGTTGCCCCAGATGTTTCTGGCTCGATGC
GCGGCTCTATCAATCCGAAGTCGCAAGTACGTTATGTCGATGTTGCAGGCATTTTCGCTGGCTCGCTCTATCGCAGCAAC
CCAACCGCCCAACTGCTACCTTTTAATACCAGCATTGTTCAGATGGAGACTTGGCGCGAAACCAAATTGATGTGGTTGAC
AAAGCAAATTACGGCCAAACTTGGTGGTGGAACCGCGGTTTCCGCCCCAATTTCCTACTTGTACGAGCGCCGTGAGGTGG
TCGATGTAGTAATTGCGATTACTGACAACGAAGAATGGGCACGTGATAGCGATAGTGGAACAAGTTTTGTCAGTGTCTGG
CGTAAATATTTGGCCAAGGTTAATCCCAAAGCTCAAGCATTTTTAATCACGATTGCGCCCTATCCACACGCGGTTGCCCC
GCCCGATGAGCCAAATGTCAGCTTTATTTTTGGCTGGGCCGAGCATGTGCCAGCCTATATCGCCCAAAGCTTGCTTGGAT
ATGCCGATCAGCTGAGCACGATCGAGCAGATTACACTCTAA

Upstream 100 bases:

>100_bases
CCGACCTATTCTGACACCATGGTCTAGACGAATCAGCTGTGATGTAGTTGCCCAAACCAATTCATAGCGTTTGATCCGCA
AGTGTGATTCGGGCTAGACC

Downstream 100 bases:

>100_bases
TCAAGCCAATGCTAACAATCCCTGTAGCACAATTCTACAGGGATTACTGCATTTAAATTGAATTTTCGTGTATGATTAAC
CAATGCAACGGCTCATCGAT

Product: TROVE domain-containing protein

Products: NA

Alternate protein names: TROVE Domain Protein; 60-KDa SS-A/Ro Ribonucleoprotein; Ribonucleoprotein-Like; Trove Domain-Containing Protein; Trove Domain Protein; Ribonucleoprotein-Related Protein; Ribonucleoprotein Related-Protein

Number of amino acids: Translated: 546; Mature: 546

Protein sequence:

>546_residues
MVALLRRVVFLPYNLEVAMNIVRRLFARTPDAAHGLNHEGFPTYQRSLAERYMQTLLTNTIGSTFYASQGSNYALALELH
QAMLAHNPLFAAKALVYAREQGTMRLQPIIGLVVLSTVDLGLFHLIFKRIILTPGDLQDFVQIVRSRQIRPGMGRAIKQT
INDWLLNLSEYHVIKYGGTNAGSMTLRDVLRLTRPQPIDDRTNALFSYLIDRERWRTTWAEQASTLLPQIAAVEQLKRTS
DPTEQRALVEAGRLPYEIVTGTGKPDLAMWRTLIEQMPYLALLRNLASLQRAGVFHDAAMIEYVVGRLGDLEALRRAKIL
PFRLHAAWLAFTPLSEQEKLIQQTLEQMIEMAFVNMPEIPGRVVVAPDVSGSMRGSINPKSQVRYVDVAGIFAGSLYRSN
PTAQLLPFNTSIVQMETWRETKLMWLTKQITAKLGGGTAVSAPISYLYERREVVDVVIAITDNEEWARDSDSGTSFVSVW
RKYLAKVNPKAQAFLITIAPYPHAVAPPDEPNVSFIFGWAEHVPAYIAQSLLGYADQLSTIEQITL

Sequences:

>Translated_546_residues
MVALLRRVVFLPYNLEVAMNIVRRLFARTPDAAHGLNHEGFPTYQRSLAERYMQTLLTNTIGSTFYASQGSNYALALELH
QAMLAHNPLFAAKALVYAREQGTMRLQPIIGLVVLSTVDLGLFHLIFKRIILTPGDLQDFVQIVRSRQIRPGMGRAIKQT
INDWLLNLSEYHVIKYGGTNAGSMTLRDVLRLTRPQPIDDRTNALFSYLIDRERWRTTWAEQASTLLPQIAAVEQLKRTS
DPTEQRALVEAGRLPYEIVTGTGKPDLAMWRTLIEQMPYLALLRNLASLQRAGVFHDAAMIEYVVGRLGDLEALRRAKIL
PFRLHAAWLAFTPLSEQEKLIQQTLEQMIEMAFVNMPEIPGRVVVAPDVSGSMRGSINPKSQVRYVDVAGIFAGSLYRSN
PTAQLLPFNTSIVQMETWRETKLMWLTKQITAKLGGGTAVSAPISYLYERREVVDVVIAITDNEEWARDSDSGTSFVSVW
RKYLAKVNPKAQAFLITIAPYPHAVAPPDEPNVSFIFGWAEHVPAYIAQSLLGYADQLSTIEQITL
>Mature_546_residues
MVALLRRVVFLPYNLEVAMNIVRRLFARTPDAAHGLNHEGFPTYQRSLAERYMQTLLTNTIGSTFYASQGSNYALALELH
QAMLAHNPLFAAKALVYAREQGTMRLQPIIGLVVLSTVDLGLFHLIFKRIILTPGDLQDFVQIVRSRQIRPGMGRAIKQT
INDWLLNLSEYHVIKYGGTNAGSMTLRDVLRLTRPQPIDDRTNALFSYLIDRERWRTTWAEQASTLLPQIAAVEQLKRTS
DPTEQRALVEAGRLPYEIVTGTGKPDLAMWRTLIEQMPYLALLRNLASLQRAGVFHDAAMIEYVVGRLGDLEALRRAKIL
PFRLHAAWLAFTPLSEQEKLIQQTLEQMIEMAFVNMPEIPGRVVVAPDVSGSMRGSINPKSQVRYVDVAGIFAGSLYRSN
PTAQLLPFNTSIVQMETWRETKLMWLTKQITAKLGGGTAVSAPISYLYERREVVDVVIAITDNEEWARDSDSGTSFVSVW
RKYLAKVNPKAQAFLITIAPYPHAVAPPDEPNVSFIFGWAEHVPAYIAQSLLGYADQLSTIEQITL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI291084629, Length=463, Percent_Identity=24.8380129589633, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI31377800, Length=463, Percent_Identity=24.8380129589633, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI291084624, Length=463, Percent_Identity=24.8380129589633, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI291084635, Length=454, Percent_Identity=25.1101321585903, Blast_Score=96, Evalue=8e-20,
Organism=Homo sapiens, GI108796056, Length=454, Percent_Identity=25.1101321585903, Blast_Score=96, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17557834, Length=465, Percent_Identity=22.7956989247312, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61394; Mature: 61394

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50988 TROVE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVALLRRVVFLPYNLEVAMNIVRRLFARTPDAAHGLNHEGFPTYQRSLAERYMQTLLTNT
CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
IGSTFYASQGSNYALALELHQAMLAHNPLFAAKALVYAREQGTMRLQPIIGLVVLSTVDL
HCCCEEECCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHH
GLFHLIFKRIILTPGDLQDFVQIVRSRQIRPGMGRAIKQTINDWLLNLSEYHVIKYGGTN
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
AGSMTLRDVLRLTRPQPIDDRTNALFSYLIDRERWRTTWAEQASTLLPQIAAVEQLKRTS
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DPTEQRALVEAGRLPYEIVTGTGKPDLAMWRTLIEQMPYLALLRNLASLQRAGVFHDAAM
CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHH
IEYVVGRLGDLEALRRAKILPFRLHAAWLAFTPLSEQEKLIQQTLEQMIEMAFVNMPEIP
HHHHHHCCCCHHHHHHHCCCCEEHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
GRVVVAPDVSGSMRGSINPKSQVRYVDVAGIFAGSLYRSNPTAQLLPFNTSIVQMETWRE
CEEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCEEEECCCCEEEEHHHHH
TKLMWLTKQITAKLGGGTAVSAPISYLYERREVVDVVIAITDNEEWARDSDSGTSFVSVW
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEEEEECCHHHCCCCCCCHHHHHHH
RKYLAKVNPKAQAFLITIAPYPHAVAPPDEPNVSFIFGWAEHVPAYIAQSLLGYADQLST
HHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
IEQITL
HHHHCC
>Mature Secondary Structure
MVALLRRVVFLPYNLEVAMNIVRRLFARTPDAAHGLNHEGFPTYQRSLAERYMQTLLTNT
CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
IGSTFYASQGSNYALALELHQAMLAHNPLFAAKALVYAREQGTMRLQPIIGLVVLSTVDL
HCCCEEECCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHH
GLFHLIFKRIILTPGDLQDFVQIVRSRQIRPGMGRAIKQTINDWLLNLSEYHVIKYGGTN
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
AGSMTLRDVLRLTRPQPIDDRTNALFSYLIDRERWRTTWAEQASTLLPQIAAVEQLKRTS
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DPTEQRALVEAGRLPYEIVTGTGKPDLAMWRTLIEQMPYLALLRNLASLQRAGVFHDAAM
CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHH
IEYVVGRLGDLEALRRAKILPFRLHAAWLAFTPLSEQEKLIQQTLEQMIEMAFVNMPEIP
HHHHHHCCCCHHHHHHHCCCCEEHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
GRVVVAPDVSGSMRGSINPKSQVRYVDVAGIFAGSLYRSNPTAQLLPFNTSIVQMETWRE
CEEEEECCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCEEEECCCCEEEEHHHHH
TKLMWLTKQITAKLGGGTAVSAPISYLYERREVVDVVIAITDNEEWARDSDSGTSFVSVW
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEEEEECCHHHCCCCCCCHHHHHHH
RKYLAKVNPKAQAFLITIAPYPHAVAPPDEPNVSFIFGWAEHVPAYIAQSLLGYADQLST
HHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
IEQITL
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA