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The map label for this gene is yoaJ [H]

Identifier: 159897669

GI number: 159897669

Start: 1303658

End: 1304479

Strand: Direct

Name: yoaJ [H]

Synonym: Haur_1140

Alternate gene names: 159897669

Gene position: 1303658-1304479 (Clockwise)

Preceding gene: 159897668

Following gene: 159897672

Centisome position: 20.54

GC content: 48.91

Gene sequence:

>822_bases
ATGCTTGTTCGCACTCATGCTGTACGTTGGCTATTGTTTGTAAGTTTGTTCATGGTGATATTTGGGAGTTATGCTTGGCA
GCAACAGAGCTTTGCCCAAAATCCGGCCACAATCACCAATCCATGGGCAATTCGCCAAGGCCAAGCTACCTATTACACCG
CCACTGGTTTGGGCAATTGTAGTATTCCTGTGCCCAGCGATTTGCTATTTGGAGCTATGAATAACCCCGATTATGCCACC
GCTGATTATTGTGGCGCGTTCGTTAAAATTACAGGGCCATTAGGATCGGTCACAGTTCAAATTACCGACCGCTGCCCTGA
ATGCCAAACTGGGCATATCGACCTCAGCCCGCAAGCCTTCGATCGCATCGCTAATCGAGTTACGGGCATTGTGCCAATTA
CTTGGCAATTAATCAGCAATCCAGCGACCACAGGCAAGGTCAGTTATCATTTTAAAGATGGTAGCAGTCAATGGTGGACG
GCGGTGCAGCCCCGCAATCATCGTAATGCGATTGCCAAATTTGAATATCGCATGGGTCAGGCGGCGTATAAAGTTGCTCC
ACGCTTTATTTTCAATTATTTTATTGCCGAGGCTGGCATGGGTACTGGCCCCTACAGCTTTCGCACCACCGATGTGTATG
GCAATATGATTGTTGATGAAAATATTGTGCTTGGTGATGATGTAATTCGCACTGGGACTCAGCAATTTCCCTATATGGCT
CCGCCTGGCTCGGCCACCCCAACCCCCAGCCCAACGCCACGGCCAACCATCCCACCCGAAAGCCTAACTGAACATGTTTG
GCTGCCTTATACTCGTAAATAG

Upstream 100 bases:

>100_bases
CCATCAACGGGTGGTGCTGTTTTGATGTTAACCAAACTTGACAGCAACCACCGCATTGCGTAGAGTGGCAACTATTAATT
ATTAGTTAAAGGTAGGTTGT

Downstream 100 bases:

>100_bases
ATAAGTGCCCTTACCCCCGACCCCTCGCCCACTGCGGCGGGCGAGGGGAGATCCAATGATCATGATCGAAGGTTTCCCCC
TCGCCTGCTCGGCGGGAGAG

Product: rare lipoprotein A

Products: NA

Alternate protein names: EXLX1 [H]

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MLVRTHAVRWLLFVSLFMVIFGSYAWQQQSFAQNPATITNPWAIRQGQATYYTATGLGNCSIPVPSDLLFGAMNNPDYAT
ADYCGAFVKITGPLGSVTVQITDRCPECQTGHIDLSPQAFDRIANRVTGIVPITWQLISNPATTGKVSYHFKDGSSQWWT
AVQPRNHRNAIAKFEYRMGQAAYKVAPRFIFNYFIAEAGMGTGPYSFRTTDVYGNMIVDENIVLGDDVIRTGTQQFPYMA
PPGSATPTPSPTPRPTIPPESLTEHVWLPYTRK

Sequences:

>Translated_273_residues
MLVRTHAVRWLLFVSLFMVIFGSYAWQQQSFAQNPATITNPWAIRQGQATYYTATGLGNCSIPVPSDLLFGAMNNPDYAT
ADYCGAFVKITGPLGSVTVQITDRCPECQTGHIDLSPQAFDRIANRVTGIVPITWQLISNPATTGKVSYHFKDGSSQWWT
AVQPRNHRNAIAKFEYRMGQAAYKVAPRFIFNYFIAEAGMGTGPYSFRTTDVYGNMIVDENIVLGDDVIRTGTQQFPYMA
PPGSATPTPSPTPRPTIPPESLTEHVWLPYTRK
>Mature_273_residues
MLVRTHAVRWLLFVSLFMVIFGSYAWQQQSFAQNPATITNPWAIRQGQATYYTATGLGNCSIPVPSDLLFGAMNNPDYAT
ADYCGAFVKITGPLGSVTVQITDRCPECQTGHIDLSPQAFDRIANRVTGIVPITWQLISNPATTGKVSYHFKDGSSQWWT
AVQPRNHRNAIAKFEYRMGQAAYKVAPRFIFNYFIAEAGMGTGPYSFRTTDVYGNMIVDENIVLGDDVIRTGTQQFPYMA
PPGSATPTPSPTPRPTIPPESLTEHVWLPYTRK

Specific function: May promote colonization of plant roots. May cause loosening and extension of plant cell walls by disrupting non- covalent bonding between cellulose microfibrils and matrix glucans. Has very low expansin activity (in vitro). No enzymatic activity has been

COG id: COG4305

COG function: function code G; Endoglucanase C-terminal domain/subunit and related proteins

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 expansin-like EG45 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR007117 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 30314; Mature: 30314

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVRTHAVRWLLFVSLFMVIFGSYAWQQQSFAQNPATITNPWAIRQGQATYYTATGLGNC
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCEEEECCCEEEEEECCCCCC
SIPVPSDLLFGAMNNPDYATADYCGAFVKITGPLGSVTVQITDRCPECQTGHIDLSPQAF
CCCCCCHHEEECCCCCCCCCHHHCCEEEEEECCCCEEEEEEECCCCCCCCCCEECCHHHH
DRIANRVTGIVPITWQLISNPATTGKVSYHFKDGSSQWWTAVQPRNHRNAIAKFEYRMGQ
HHHHHHHCCEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHH
AAYKVAPRFIFNYFIAEAGMGTGPYSFRTTDVYGNMIVDENIVLGDDVIRTGTQQFPYMA
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCEEECCHHHHCCCCCCCEEC
PPGSATPTPSPTPRPTIPPESLTEHVWLPYTRK
CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLVRTHAVRWLLFVSLFMVIFGSYAWQQQSFAQNPATITNPWAIRQGQATYYTATGLGNC
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCEEEECCCEEEEEECCCCCC
SIPVPSDLLFGAMNNPDYATADYCGAFVKITGPLGSVTVQITDRCPECQTGHIDLSPQAF
CCCCCCHHEEECCCCCCCCCHHHCCEEEEEECCCCEEEEEEECCCCCCCCCCEECCHHHH
DRIANRVTGIVPITWQLISNPATTGKVSYHFKDGSSQWWTAVQPRNHRNAIAKFEYRMGQ
HHHHHHHCCEEEEEEEEECCCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHH
AAYKVAPRFIFNYFIAEAGMGTGPYSFRTTDVYGNMIVDENIVLGDDVIRTGTQQFPYMA
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCEEECCHHHHCCCCCCCEEC
PPGSATPTPSPTPRPTIPPESLTEHVWLPYTRK
CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]