| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is yxeH [H]
Identifier: 159897648
GI number: 159897648
Start: 1281554
End: 1282369
Strand: Direct
Name: yxeH [H]
Synonym: Haur_1119
Alternate gene names: 159897648
Gene position: 1281554-1282369 (Clockwise)
Preceding gene: 159897647
Following gene: 159897649
Centisome position: 20.19
GC content: 53.06
Gene sequence:
>816_bases ATGACCCCGAAATATCGTTTGTTGGCGCTTGATCTTGATGGAACCTTGCTTGATTCACGCTTAGAGCCAAGCGCCGCCAC CAGAGCTGCGATTGCTGATGCCCAAGCCGCCGGAGTGCATGTCACAATTGCCACTGGCCGCATGATTCGCACCGCTCAGC CGTTTGCCGATATGTTGCAGATAACCACCCCGCTGATTACTTACCAAGGCGCACATGTGCAAACCGCCGATGGCACGGTG CTCTACGATAATCCCTTGCCCGCCGATTTGGCCGCCGAAGTGGTCGAATTGGCCTTAGCTGAGGGCTTGTATATTCAGGC CTATATCGATGATGAGCTGTGGATTGTTGAGCGTAGCCCTGAGGTTGAAGAATATTTGGGCTTTTCGCTGGTCGATATTC CGGTAAATATTGCCCCCAACTTGGTTGAAATTGTGCGCCAAAAACCTGTTACCAAGCTGGTTTGGATTACCGACCCAACT GAATTAGAGCGCACAATGCACGAATGGGGTGAACGCTGGAAAGGTCGCTTGGAGATCTTTCGTTCGCACGATCATTTTGG TGAGGCGGCGGCGATTGGTAGCTCCAAAGGTGTTGGTTTAGCCGTGCTTGCCGAACATTTGGACATTCCCCAGGCCGAAG TTGCCGCAATTGGCGATCGCGAAAACGATGCTTCGATGTTGGCGTGGGCAGGCTTTGGCATGGCTATGGGCAATGCTGAT CGCTTTGCCTTAGCTGCGGCTAATTATGTGTTGCCTGCGCTCAGCGACGATGGTGCGGCCTATGGCATTCGCCATTTTGT GTTAGGCGAAGAGTAG
Upstream 100 bases:
>100_bases GTAAGTGATGGTGCTATACTAACCAGCATTACAGGATATCGACTCAACGACGCTGCGGTATACTAATCGCACGTCGTTGT TGCGTTTTAGAGGATGGTTC
Downstream 100 bases:
>100_bases CTGTAATGATACATAGCATTAACAACCGTTGATATTCCCCTCACCCCCAGCCCCTCTCCCACTGCCGTGGGCGAGGGGAG CACTGTTGGAGCGCTTCCCC
Product: Cof-like hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MTPKYRLLALDLDGTLLDSRLEPSAATRAAIADAQAAGVHVTIATGRMIRTAQPFADMLQITTPLITYQGAHVQTADGTV LYDNPLPADLAAEVVELALAEGLYIQAYIDDELWIVERSPEVEEYLGFSLVDIPVNIAPNLVEIVRQKPVTKLVWITDPT ELERTMHEWGERWKGRLEIFRSHDHFGEAAAIGSSKGVGLAVLAEHLDIPQAEVAAIGDRENDASMLAWAGFGMAMGNAD RFALAAANYVLPALSDDGAAYGIRHFVLGEE
Sequences:
>Translated_271_residues MTPKYRLLALDLDGTLLDSRLEPSAATRAAIADAQAAGVHVTIATGRMIRTAQPFADMLQITTPLITYQGAHVQTADGTV LYDNPLPADLAAEVVELALAEGLYIQAYIDDELWIVERSPEVEEYLGFSLVDIPVNIAPNLVEIVRQKPVTKLVWITDPT ELERTMHEWGERWKGRLEIFRSHDHFGEAAAIGSSKGVGLAVLAEHLDIPQAEVAAIGDRENDASMLAWAGFGMAMGNAD RFALAAANYVLPALSDDGAAYGIRHFVLGEE >Mature_270_residues TPKYRLLALDLDGTLLDSRLEPSAATRAAIADAQAAGVHVTIATGRMIRTAQPFADMLQITTPLITYQGAHVQTADGTVL YDNPLPADLAAEVVELALAEGLYIQAYIDDELWIVERSPEVEEYLGFSLVDIPVNIAPNLVEIVRQKPVTKLVWITDPTE LERTMHEWGERWKGRLEIFRSHDHFGEAAAIGSSKGVGLAVLAEHLDIPQAEVAAIGDRENDASMLAWAGFGMAMGNADR FALAAANYVLPALSDDGAAYGIRHFVLGEE
Specific function: Unknown
COG id: COG0561
COG function: function code R; Predicted hydrolases of the HAD superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]
Homologues:
Organism=Escherichia coli, GI2367265, Length=271, Percent_Identity=31.3653136531365, Blast_Score=107, Evalue=9e-25, Organism=Escherichia coli, GI87081741, Length=237, Percent_Identity=29.957805907173, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI48994981, Length=242, Percent_Identity=30.5785123966942, Blast_Score=86, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006379 - InterPro: IPR000150 - InterPro: IPR006380 [H]
Pfam domain/function: PF00702 Hydrolase; PF05116 S6PP [H]
EC number: NA
Molecular weight: Translated: 29419; Mature: 29287
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPKYRLLALDLDGTLLDSRLEPSAATRAAIADAQAAGVHVTIATGRMIRTAQPFADMLQ CCCCEEEEEEECCCCEECCCCCCCHHHHHHHHCCCCCCEEEEEECCCEEECCCHHHHHHH ITTPLITYQGAHVQTADGTVLYDNPLPADLAAEVVELALAEGLYIQAYIDDELWIVERSP HHHHHEEECCCEEEECCCEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEECCC EVEEYLGFSLVDIPVNIAPNLVEIVRQKPVTKLVWITDPTELERTMHEWGERWKGRLEIF CHHHHHCCEEEEECCCCCCHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHCCCEEEE RSHDHFGEAAAIGSSKGVGLAVLAEHLDIPQAEVAAIGDRENDASMLAWAGFGMAMGNAD ECCCCCCCHHCCCCCCCCHHHHHHHHCCCCCHHHEEECCCCCCCCEEEEECCCCEECCCC RFALAAANYVLPALSDDGAAYGIRHFVLGEE CEEEEEHHHEEEEECCCCCEECEEEEEECCC >Mature Secondary Structure TPKYRLLALDLDGTLLDSRLEPSAATRAAIADAQAAGVHVTIATGRMIRTAQPFADMLQ CCCEEEEEEECCCCEECCCCCCCHHHHHHHHCCCCCCEEEEEECCCEEECCCHHHHHHH ITTPLITYQGAHVQTADGTVLYDNPLPADLAAEVVELALAEGLYIQAYIDDELWIVERSP HHHHHEEECCCEEEECCCEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEECCC EVEEYLGFSLVDIPVNIAPNLVEIVRQKPVTKLVWITDPTELERTMHEWGERWKGRLEIF CHHHHHCCEEEEECCCCCCHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHCCCEEEE RSHDHFGEAAAIGSSKGVGLAVLAEHLDIPQAEVAAIGDRENDASMLAWAGFGMAMGNAD ECCCCCCCHHCCCCCCCCHHHHHHHHCCCCCHHHEEECCCCCCCCEEEEECCCCEECCCC RFALAAANYVLPALSDDGAAYGIRHFVLGEE CEEEEEHHHEEEEECCCCCEECEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8867804; 9384377 [H]