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The map label for this gene is ycfQ [H]

Identifier: 159897616

GI number: 159897616

Start: 1244283

End: 1244951

Strand: Direct

Name: ycfQ [H]

Synonym: Haur_1087

Alternate gene names: 159897616

Gene position: 1244283-1244951 (Clockwise)

Preceding gene: 159897614

Following gene: 159897617

Centisome position: 19.61

GC content: 51.42

Gene sequence:

>669_bases
ATGCAAACAACCCGACCGCGAGGCCGACCGCGTACTTTTGATCGGCAAGCAGCGCTTGATGCGGCGATGGAATTATTTTG
GCGACATGGTTACGAAGGCACATCGATTGCCGATTTGACGGCGGCGATGGGCTTTACGCCGCCGACCTTGTATGCAGCTT
TTGGCTCAAAAGAAGATTTGTATCGTGAGGTGATTCAGCATTTTTTACTGCGCAGCGAGCGCCAACGCATGGAAGCAGCG
CTGAATCAAACCAGTGCCTATGCCATGTTGCGTTACTATTTGTATGCTGCGGCTGAAAGTTTTACCGACCCCAGCACGCC
AGCGGGCTGTATGGTGGCGACGGCAGCCTTACAATGTGCGGTCGAAAATCAACCAATAGTTCAAGAAGTGGCGCGAATTC
GACATCAGATGTTTATTGGGTTTGTTGAGCGGCTTGATGTTGCGAAACGGAATCAGGAATTACCTGAAACGATTGATTCG
CTGGCATTAGCCAATTTCTACACCGCGATTGTGCAGGGTATGTCGGTGCAAGCAATCGATGGGGCCAGCAGCGCCGATTT
GATTGCAGTGGCCGATCTTGCGCTGAGTGCATGGCCAGGTGAAAAGTCAGAAGGCAAAAGTCAAAAGGCAAAAGTACAAA
GGGATCAGGATTCAGGGATCAGGGGCTAG

Upstream 100 bases:

>100_bases
GGCATAGATGCTCCATTGATTTATTTTATAGAACGCTATAAAATAAATTTACTGGATGTTTTAGCGAATGTCAAATTTTA
CTAGTGATCGATAGATAATT

Downstream 100 bases:

>100_bases
ATTTTAATGTAGTGGCGTAGAGGGGATTTAGGGATCAGGGGCTAGTAATTAGGAATCAGGATTGGTGCTTGGGCTAGCTA
ATTCAAATCTGATCCCTAGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MQTTRPRGRPRTFDRQAALDAAMELFWRHGYEGTSIADLTAAMGFTPPTLYAAFGSKEDLYREVIQHFLLRSERQRMEAA
LNQTSAYAMLRYYLYAAAESFTDPSTPAGCMVATAALQCAVENQPIVQEVARIRHQMFIGFVERLDVAKRNQELPETIDS
LALANFYTAIVQGMSVQAIDGASSADLIAVADLALSAWPGEKSEGKSQKAKVQRDQDSGIRG

Sequences:

>Translated_222_residues
MQTTRPRGRPRTFDRQAALDAAMELFWRHGYEGTSIADLTAAMGFTPPTLYAAFGSKEDLYREVIQHFLLRSERQRMEAA
LNQTSAYAMLRYYLYAAAESFTDPSTPAGCMVATAALQCAVENQPIVQEVARIRHQMFIGFVERLDVAKRNQELPETIDS
LALANFYTAIVQGMSVQAIDGASSADLIAVADLALSAWPGEKSEGKSQKAKVQRDQDSGIRG
>Mature_222_residues
MQTTRPRGRPRTFDRQAALDAAMELFWRHGYEGTSIADLTAAMGFTPPTLYAAFGSKEDLYREVIQHFLLRSERQRMEAA
LNQTSAYAMLRYYLYAAAESFTDPSTPAGCMVATAALQCAVENQPIVQEVARIRHQMFIGFVERLDVAKRNQELPETIDS
LALANFYTAIVQGMSVQAIDGASSADLIAVADLALSAWPGEKSEGKSQKAKVQRDQDSGIRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=197, Percent_Identity=38.0710659898477, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI87082397, Length=204, Percent_Identity=27.4509803921569, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24504; Mature: 24504

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTTRPRGRPRTFDRQAALDAAMELFWRHGYEGTSIADLTAAMGFTPPTLYAAFGSKEDL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCCHHHH
YREVIQHFLLRSERQRMEAALNQTSAYAMLRYYLYAAAESFTDPSTPAGCMVATAALQCA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
VENQPIVQEVARIRHQMFIGFVERLDVAKRNQELPETIDSLALANFYTAIVQGMSVQAID
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEC
GASSADLIAVADLALSAWPGEKSEGKSQKAKVQRDQDSGIRG
CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQTTRPRGRPRTFDRQAALDAAMELFWRHGYEGTSIADLTAAMGFTPPTLYAAFGSKEDL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCCHHHH
YREVIQHFLLRSERQRMEAALNQTSAYAMLRYYLYAAAESFTDPSTPAGCMVATAALQCA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
VENQPIVQEVARIRHQMFIGFVERLDVAKRNQELPETIDSLALANFYTAIVQGMSVQAID
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEC
GASSADLIAVADLALSAWPGEKSEGKSQKAKVQRDQDSGIRG
CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]