Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159897532

Identifier: 159897532

GI number: 159897532

Start: 1148549

End: 1149226

Strand: Reverse

Name: 159897532

Synonym: Haur_1003

Alternate gene names: NA

Gene position: 1149226-1148549 (Counterclockwise)

Preceding gene: 159897533

Following gene: 159897530

Centisome position: 18.11

GC content: 47.35

Gene sequence:

>678_bases
ATGAGCAACAATCAATTGACGTTGGTGATGGTCAACGAATCGCCGATCTTTGGCTCGATGATGGTCTATACCCAAAATCC
CGATCTTGCTGAGTTGGCGGCCTATCGCTTTATCAACCAGCCAGTTCATCCTACAACCCAAGCAAGCTTTAGTTGGAACG
ATCAATCGTATGGATTTACTTGGGTGCAAAATGTGGCTCCAGTTGATAACATTGGCATTACGACCAACCTGATTCAGCTT
TGGCCTGCCGATGAGAGCCAAAACAACCAAGTGACCCTGACCCAAATCGACGATGCTTATACCTTCAAAGACCAAACTAA
AGCTGAGATAACAGGCTCGTTGGTGATTGTGCAAGATAGCACGGTCGGAGCAAATGCGGTGCAAATAGGCGTGAGTTTTG
CTGGTAGCCCAGTTTTTGTAGTTGCTTCCGAACCAAACGTGACCGCAACGTTTACCCCAAAGATTGATTATTGGATTGTA
TTTGGCTATACCGTGGTTGAGAACGGTGTAACCATCACTACAACTACCAAGCCGCAACAGCTGGTGTTCCCATCGGGCTA
TGATACGATTACCGCCGTGCTAGATGCTGATTATCACTGGCAAATTAGCCCAAGTGTAGCGACGGCTGGCAACCAAAATC
AAGCCAGTGCCGAAACACTGGAAATTGCTGCGAGCTAA

Upstream 100 bases:

>100_bases
GAATTGTAATTCGTTACTCTTGGTCGCCTGACTGTCAACAAACTGGCTTGGCTTGACCTTTTATGGCTAGGGTGTTGACA
GTTTGCAATTAGGAGGAACG

Downstream 100 bases:

>100_bases
CAATTTGACAAAAACTGGCTGCTGGATATAATACACAACGTTGCATGGCGCATTCGTCTAGCGGCCTAGGACGTCACCCT
TTCAAGGTGAAGATCACGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MSNNQLTLVMVNESPIFGSMMVYTQNPDLAELAAYRFINQPVHPTTQASFSWNDQSYGFTWVQNVAPVDNIGITTNLIQL
WPADESQNNQVTLTQIDDAYTFKDQTKAEITGSLVIVQDSTVGANAVQIGVSFAGSPVFVVASEPNVTATFTPKIDYWIV
FGYTVVENGVTITTTTKPQQLVFPSGYDTITAVLDADYHWQISPSVATAGNQNQASAETLEIAAS

Sequences:

>Translated_225_residues
MSNNQLTLVMVNESPIFGSMMVYTQNPDLAELAAYRFINQPVHPTTQASFSWNDQSYGFTWVQNVAPVDNIGITTNLIQL
WPADESQNNQVTLTQIDDAYTFKDQTKAEITGSLVIVQDSTVGANAVQIGVSFAGSPVFVVASEPNVTATFTPKIDYWIV
FGYTVVENGVTITTTTKPQQLVFPSGYDTITAVLDADYHWQISPSVATAGNQNQASAETLEIAAS
>Mature_224_residues
SNNQLTLVMVNESPIFGSMMVYTQNPDLAELAAYRFINQPVHPTTQASFSWNDQSYGFTWVQNVAPVDNIGITTNLIQLW
PADESQNNQVTLTQIDDAYTFKDQTKAEITGSLVIVQDSTVGANAVQIGVSFAGSPVFVVASEPNVTATFTPKIDYWIVF
GYTVVENGVTITTTTKPQQLVFPSGYDTITAVLDADYHWQISPSVATAGNQNQASAETLEIAAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24456; Mature: 24325

Theoretical pI: Translated: 3.75; Mature: 3.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNQLTLVMVNESPIFGSMMVYTQNPDLAELAAYRFINQPVHPTTQASFSWNDQSYGFT
CCCCEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEE
WVQNVAPVDNIGITTNLIQLWPADESQNNQVTLTQIDDAYTFKDQTKAEITGSLVIVQDS
EECCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCEEEECCCCCEEEEEEEEEEECC
TVGANAVQIGVSFAGSPVFVVASEPNVTATFTPKIDYWIVFGYTVVENGVTITTTTKPQQ
CCCCCEEEEEEEECCCCEEEEECCCCEEEEECCCCCEEEEEEEEEECCCEEEEECCCCCE
LVFPSGYDTITAVLDADYHWQISPSVATAGNQNQASAETLEIAAS
EEECCCCCEEEEEEECCEEEEECCCEEECCCCCCCCCEEEEEEEC
>Mature Secondary Structure 
SNNQLTLVMVNESPIFGSMMVYTQNPDLAELAAYRFINQPVHPTTQASFSWNDQSYGFT
CCCEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEE
WVQNVAPVDNIGITTNLIQLWPADESQNNQVTLTQIDDAYTFKDQTKAEITGSLVIVQDS
EECCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCEEEECCCCCEEEEEEEEEEECC
TVGANAVQIGVSFAGSPVFVVASEPNVTATFTPKIDYWIVFGYTVVENGVTITTTTKPQQ
CCCCCEEEEEEEECCCCEEEEECCCCEEEEECCCCCEEEEEEEEEECCCEEEEECCCCCE
LVFPSGYDTITAVLDADYHWQISPSVATAGNQNQASAETLEIAAS
EEECCCCCEEEEEEECCEEEEECCCEEECCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA