Click here to switch to the map view.

The map label for this gene is yngJ [H]

Identifier: 159897488

GI number: 159897488

Start: 1099647

End: 1100738

Strand: Reverse

Name: yngJ [H]

Synonym: Haur_0959

Alternate gene names: 159897488

Gene position: 1100738-1099647 (Counterclockwise)

Preceding gene: 159897489

Following gene: 159897487

Centisome position: 17.34

GC content: 52.56

Gene sequence:

>1092_bases
ATGATTTCCTTCTCTCCATCTGAAGAACAAGCCCTGATTGTTGATACGCTTAAACGTTTTGCCAAGGATCGTCTGCGCTC
GATTTTTCGCGAGGCCGACGAAAATGGCGAATTGCCCGCCGATATTCTGAGCAAAGGCTGGGAATTAGGCTTGGTCGGTT
CGTCGATTCCTGAGCAATACGGCGGTTTTGGTGAATTTTCGGCGGTAACTGGTGCGTTGGCACTCGAAGAGTTGGCTTGG
GGCGATTTGGCTAGTGCTTTGGCCTTGAGCGCTCCTGCTAGCTTTGCATTCGCAATTTTGGCGGCTGGCACTGAAGCCCA
ACGCGAAGCGCTGTTGCCTCAATTTAGCGAAGAAAGCTTCGTCAACGCCACCTCAGCCTTGATCGAACCCCGCCTACAAT
TCAACCCACGCAAATTGCAAACCACGGCCACCCGCGATGGCGATGGCTATGTGTTAAACGGGGTCAAAAGCTATGTGCCA
CTGGCCAACAGCGCCGAACATTTCTTGATTTATGCTGCTGAAGATGGCCAAACCCAAGCTTTTATTGTGCCCACGAAAAC
CACTGGCCTAACTGTTGGTGAGCGTGAAAAATTGATGGGTGTACGGGCGCTTGAAGTCGCTCGCATCACCCTCGACAACG
TGAAAGTTGCCGCCGATGCCAAACTTGGCGGCGAAGCTGGCATCGATTTCGGACGTTTATATGCGCGTTCACAGGTTGGC
TTGGCTGCTTTGGCGGTTGGAGTTGCCCGTGGAGCCTACGAATATGCCCTTGATTATGCCCGTAATCGCCAAACGTTTGG
CGAAGCGATCGGTCAACGCCAATCAATTGCCTTTATGTTGGCCGAAATGCTGGTCGAAATTGATGGCGCACGCTTGATGG
TTTGGGAAGCGGCTTGGAAGCTCGATAATAACCAAGAAGTCACTCGCGATGCGCTGATGGCCAAACACAACGCCGACAAA
ACGGTCTTGATGGTTTGCGACCGCGCCTTGCAAATTCTTGGCGGTCACGGCTATATTCGTGAGTTTCCAGTCGAATTATG
GCTGCGCAACGCTCGTGGCTTCAGCACCTTCGACGGCTTGGCAATGGTCTAA

Upstream 100 bases:

>100_bases
CTCGGCACACTCATGTAATTAGCTCAAAAGTCAAAAGGCAGAAGGCAAAAATTCTACCTTTTGACTTTTGACTTTTGATT
TGCACTCTGAGGGAGCAACG

Downstream 100 bases:

>100_bases
GTAAAGGCAAAAGGCAAAAGGCAAAAGGCAAAAGGCAAAAGGCAAAAAAATCAGAAACGAAACGTTATAAAGGTAGAAAG
TAATATAGCTCATAAATACC

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MISFSPSEEQALIVDTLKRFAKDRLRSIFREADENGELPADILSKGWELGLVGSSIPEQYGGFGEFSAVTGALALEELAW
GDLASALALSAPASFAFAILAAGTEAQREALLPQFSEESFVNATSALIEPRLQFNPRKLQTTATRDGDGYVLNGVKSYVP
LANSAEHFLIYAAEDGQTQAFIVPTKTTGLTVGEREKLMGVRALEVARITLDNVKVAADAKLGGEAGIDFGRLYARSQVG
LAALAVGVARGAYEYALDYARNRQTFGEAIGQRQSIAFMLAEMLVEIDGARLMVWEAAWKLDNNQEVTRDALMAKHNADK
TVLMVCDRALQILGGHGYIREFPVELWLRNARGFSTFDGLAMV

Sequences:

>Translated_363_residues
MISFSPSEEQALIVDTLKRFAKDRLRSIFREADENGELPADILSKGWELGLVGSSIPEQYGGFGEFSAVTGALALEELAW
GDLASALALSAPASFAFAILAAGTEAQREALLPQFSEESFVNATSALIEPRLQFNPRKLQTTATRDGDGYVLNGVKSYVP
LANSAEHFLIYAAEDGQTQAFIVPTKTTGLTVGEREKLMGVRALEVARITLDNVKVAADAKLGGEAGIDFGRLYARSQVG
LAALAVGVARGAYEYALDYARNRQTFGEAIGQRQSIAFMLAEMLVEIDGARLMVWEAAWKLDNNQEVTRDALMAKHNADK
TVLMVCDRALQILGGHGYIREFPVELWLRNARGFSTFDGLAMV
>Mature_363_residues
MISFSPSEEQALIVDTLKRFAKDRLRSIFREADENGELPADILSKGWELGLVGSSIPEQYGGFGEFSAVTGALALEELAW
GDLASALALSAPASFAFAILAAGTEAQREALLPQFSEESFVNATSALIEPRLQFNPRKLQTTATRDGDGYVLNGVKSYVP
LANSAEHFLIYAAEDGQTQAFIVPTKTTGLTVGEREKLMGVRALEVARITLDNVKVAADAKLGGEAGIDFGRLYARSQVG
LAALAVGVARGAYEYALDYARNRQTFGEAIGQRQSIAFMLAEMLVEIDGARLMVWEAAWKLDNNQEVTRDALMAKHNADK
TVLMVCDRALQILGGHGYIREFPVELWLRNARGFSTFDGLAMV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI187960098, Length=371, Percent_Identity=31.5363881401617, Blast_Score=183, Evalue=2e-46,
Organism=Homo sapiens, GI4557231, Length=371, Percent_Identity=31.5363881401617, Blast_Score=182, Evalue=3e-46,
Organism=Homo sapiens, GI4557233, Length=361, Percent_Identity=32.1329639889197, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI4501859, Length=377, Percent_Identity=28.6472148541114, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI7656849, Length=374, Percent_Identity=27.807486631016, Blast_Score=135, Evalue=5e-32,
Organism=Homo sapiens, GI226958412, Length=367, Percent_Identity=26.158038147139, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI76496475, Length=329, Percent_Identity=30.6990881458967, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI4557235, Length=329, Percent_Identity=30.6990881458967, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI226958414, Length=357, Percent_Identity=25.4901960784314, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI21361497, Length=347, Percent_Identity=27.6657060518732, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI4503943, Length=359, Percent_Identity=27.8551532033426, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI7669494, Length=363, Percent_Identity=27.5482093663912, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI4501857, Length=354, Percent_Identity=23.728813559322, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI87081958, Length=362, Percent_Identity=28.1767955801105, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786223, Length=361, Percent_Identity=28.2548476454294, Blast_Score=114, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17569725, Length=372, Percent_Identity=31.7204301075269, Blast_Score=182, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17508101, Length=372, Percent_Identity=30.3763440860215, Blast_Score=180, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17534899, Length=374, Percent_Identity=31.0160427807487, Blast_Score=171, Evalue=8e-43,
Organism=Caenorhabditis elegans, GI17506239, Length=370, Percent_Identity=27.8378378378378, Blast_Score=161, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI17570075, Length=373, Percent_Identity=29.4906166219839, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17533517, Length=362, Percent_Identity=26.7955801104972, Blast_Score=147, Evalue=8e-36,
Organism=Caenorhabditis elegans, GI71990804, Length=296, Percent_Identity=31.4189189189189, Blast_Score=138, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17538396, Length=367, Percent_Identity=26.158038147139, Blast_Score=124, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI71985184, Length=343, Percent_Identity=29.1545189504373, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71982178, Length=279, Percent_Identity=29.7491039426523, Blast_Score=104, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI32563615, Length=248, Percent_Identity=27.4193548387097, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17534353, Length=361, Percent_Identity=24.0997229916898, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71985192, Length=285, Percent_Identity=27.719298245614, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17531909, Length=230, Percent_Identity=26.0869565217391, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17505929, Length=367, Percent_Identity=23.433242506812, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17551932, Length=355, Percent_Identity=23.3802816901408, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24646207, Length=371, Percent_Identity=31.266846361186, Blast_Score=184, Evalue=9e-47,
Organism=Drosophila melanogaster, GI24660351, Length=371, Percent_Identity=30.4582210242588, Blast_Score=174, Evalue=9e-44,
Organism=Drosophila melanogaster, GI21356377, Length=366, Percent_Identity=30.8743169398907, Blast_Score=174, Evalue=1e-43,
Organism=Drosophila melanogaster, GI24666513, Length=366, Percent_Identity=28.4153005464481, Blast_Score=149, Evalue=2e-36,
Organism=Drosophila melanogaster, GI281363737, Length=364, Percent_Identity=29.6703296703297, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI21355753, Length=321, Percent_Identity=29.595015576324, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI19920834, Length=363, Percent_Identity=27.8236914600551, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 39407; Mature: 39407

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISFSPSEEQALIVDTLKRFAKDRLRSIFREADENGELPADILSKGWELGLVGSSIPEQY
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEECCCCCHHHH
GGFGEFSAVTGALALEELAWGDLASALALSAPASFAFAILAAGTEAQREALLPQFSEESF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHH
VNATSALIEPRLQFNPRKLQTTATRDGDGYVLNGVKSYVPLANSAEHFLIYAAEDGQTQA
HHHHHHHHCCCCCCCCCCEEEEECCCCCCEEECCHHHHCCCCCCCCEEEEEEECCCCEEE
FIVPTKTTGLTVGEREKLMGVRALEVARITLDNVKVAADAKLGGEAGIDFGRLYARSQVG
EEEECCCCCCCCCCHHHHHHHHHHHHEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHH
LAALAVGVARGAYEYALDYARNRQTFGEAIGQRQSIAFMLAEMLVEIDGARLMVWEAAWK
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECC
LDNNQEVTRDALMAKHNADKTVLMVCDRALQILGGHGYIREFPVELWLRNARGFSTFDGL
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC
AMV
CCC
>Mature Secondary Structure
MISFSPSEEQALIVDTLKRFAKDRLRSIFREADENGELPADILSKGWELGLVGSSIPEQY
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEECCCCCHHHH
GGFGEFSAVTGALALEELAWGDLASALALSAPASFAFAILAAGTEAQREALLPQFSEESF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHH
VNATSALIEPRLQFNPRKLQTTATRDGDGYVLNGVKSYVPLANSAEHFLIYAAEDGQTQA
HHHHHHHHCCCCCCCCCCEEEEECCCCCCEEECCHHHHCCCCCCCCEEEEEEECCCCEEE
FIVPTKTTGLTVGEREKLMGVRALEVARITLDNVKVAADAKLGGEAGIDFGRLYARSQVG
EEEECCCCCCCCCCHHHHHHHHHHHHEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHH
LAALAVGVARGAYEYALDYARNRQTFGEAIGQRQSIAFMLAEMLVEIDGARLMVWEAAWK
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECC
LDNNQEVTRDALMAKHNADKTVLMVCDRALQILGGHGYIREFPVELWLRNARGFSTFDGL
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC
AMV
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]