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The map label for this gene is bcd [H]

Identifier: 159897487

GI number: 159897487

Start: 1098160

End: 1099431

Strand: Reverse

Name: bcd [H]

Synonym: Haur_0958

Alternate gene names: 159897487

Gene position: 1099431-1098160 (Counterclockwise)

Preceding gene: 159897488

Following gene: 159897486

Centisome position: 17.32

GC content: 54.25

Gene sequence:

>1272_bases
ATGGCGATTGATTTTAAATTATCCGAAAGCATTGATACCCAACGCCAAATGGCGCAGATGGTTGCCGAACAAATGATGCG
GCCTGTTTCACGCCATTTCGATGAGCACGAACACGATATTCCATGGGATTATATCAATGCGATGTGGCCAATTATGCGCC
AAAATCCAATGTTTGGTGCTGTTGATAAACCGGAAACTGCAACCGACCCCAGCAAACCCAAAAAGCCCAAAACAGGCAAT
GTGCGCATGGTGCATTTGATCGAGGCGCTTTCGTGGGGCGATGCAGGTATGTATCTGACCACTCCAGGCGGCGCGTTGGG
TGGAGCTGCCGTCGCCGCTGCTGGCACCAACGACCAAAAAAATCGCTTCTTGGCACGCTTCGGCGAGAGCGAAACTCCGG
TTTGGGGTTCGATGGCGATGACCGAGCCACAAGCTGGCTCGGATACCTCGGCAATTCGCACCACCGCCGTGCGCGATGGT
GATTCGTGGATCTTAAACGGCGAAAAGATTTATTGTACTGGCGGTCGTTTGTCGCTCGAAGAATCACAAGGTTTGGTGGT
GGTTTGGGCGACGGTCGATCCCAAATTGGGTCGCGCTGGAATGAAGGCTTTTGTGGTCGAAGCTGGCACACCAGGCATGC
AAGTAACCAAGCTTGAGCACAAGATGGGGATTCGCGCCAGCGATACCGCCGCAGTTGTATTCACCGATTGCCGCATTCCA
TTTGATAACGTGCTCGGCAACCCCGAAATTCCGAAGGCCGAGGCAACAGCTGCCAGCGCTGACGCGCCCAAGGGCTTCAA
AGGTGCGATGAAAACCTTCGATGCCACCCGCCCAGCCGTGGCTGCTTCAGCCTTGGGGATCGCCCGCGCCGCCTTGGAAT
TGTTGCGCGAACAACTTAGCCTTGCTGGCATCCCAATCCGCGACGATGTGCCAGTTAATGAGATGAGCGCGATCGAACGT
GATGTGTTGGAATTAGAAGCCCAGCACAAAGCAGCGTGGTTGCTCACCCTCAAAGCCGCTTGGATGATGGATTCGGGTGA
AGCCAACACCGTCGAAGCCTCAGCCTGCAAAGTCAAAGCTGGCGAAGCTGCAACCGTCATCACCCAAAAAGCGGTTGAAC
TCTTGGGGCCATTAGGCTACACGCGCGAACTGCTAGCTGAAAAGTGGATGCGCGATGCCAAGATCAACGACATTTTTGAA
GGCACTGGCCAAATCAACCGCTTGATCATTGCCCGCCGGATTTTGGGCTTCTCGTCACGCGAATTGAAATAG

Upstream 100 bases:

>100_bases
AGCTTAAATTTCTATAGTATTCTAATTTTTGCTTTCTAACATTTAACTTGATATTTTGACTTTTGACTTTTGATTTCTGC
CTTAATACATGGGGGTTCTC

Downstream 100 bases:

>100_bases
GCTTTACTATTGAGCACGTGCTGGTTTGCCAGTACGTGCTTTTTGATTTTTAGCCAAGAGGTCGTCCATGCAAGCCCCTG
CGAGCGTTATCAACCATGCC

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; SCAD [H]

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MAIDFKLSESIDTQRQMAQMVAEQMMRPVSRHFDEHEHDIPWDYINAMWPIMRQNPMFGAVDKPETATDPSKPKKPKTGN
VRMVHLIEALSWGDAGMYLTTPGGALGGAAVAAAGTNDQKNRFLARFGESETPVWGSMAMTEPQAGSDTSAIRTTAVRDG
DSWILNGEKIYCTGGRLSLEESQGLVVVWATVDPKLGRAGMKAFVVEAGTPGMQVTKLEHKMGIRASDTAAVVFTDCRIP
FDNVLGNPEIPKAEATAASADAPKGFKGAMKTFDATRPAVAASALGIARAALELLREQLSLAGIPIRDDVPVNEMSAIER
DVLELEAQHKAAWLLTLKAAWMMDSGEANTVEASACKVKAGEAATVITQKAVELLGPLGYTRELLAEKWMRDAKINDIFE
GTGQINRLIIARRILGFSSRELK

Sequences:

>Translated_423_residues
MAIDFKLSESIDTQRQMAQMVAEQMMRPVSRHFDEHEHDIPWDYINAMWPIMRQNPMFGAVDKPETATDPSKPKKPKTGN
VRMVHLIEALSWGDAGMYLTTPGGALGGAAVAAAGTNDQKNRFLARFGESETPVWGSMAMTEPQAGSDTSAIRTTAVRDG
DSWILNGEKIYCTGGRLSLEESQGLVVVWATVDPKLGRAGMKAFVVEAGTPGMQVTKLEHKMGIRASDTAAVVFTDCRIP
FDNVLGNPEIPKAEATAASADAPKGFKGAMKTFDATRPAVAASALGIARAALELLREQLSLAGIPIRDDVPVNEMSAIER
DVLELEAQHKAAWLLTLKAAWMMDSGEANTVEASACKVKAGEAATVITQKAVELLGPLGYTRELLAEKWMRDAKINDIFE
GTGQINRLIIARRILGFSSRELK
>Mature_422_residues
AIDFKLSESIDTQRQMAQMVAEQMMRPVSRHFDEHEHDIPWDYINAMWPIMRQNPMFGAVDKPETATDPSKPKKPKTGNV
RMVHLIEALSWGDAGMYLTTPGGALGGAAVAAAGTNDQKNRFLARFGESETPVWGSMAMTEPQAGSDTSAIRTTAVRDGD
SWILNGEKIYCTGGRLSLEESQGLVVVWATVDPKLGRAGMKAFVVEAGTPGMQVTKLEHKMGIRASDTAAVVFTDCRIPF
DNVLGNPEIPKAEATAASADAPKGFKGAMKTFDATRPAVAASALGIARAALELLREQLSLAGIPIRDDVPVNEMSAIERD
VLELEAQHKAAWLLTLKAAWMMDSGEANTVEASACKVKAGEAATVITQKAVELLGPLGYTRELLAEKWMRDAKINDIFEG
TGQINRLIIARRILGFSSRELK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557231, Length=418, Percent_Identity=32.5358851674641, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI187960098, Length=418, Percent_Identity=32.5358851674641, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI4557233, Length=301, Percent_Identity=37.8737541528239, Blast_Score=185, Evalue=7e-47,
Organism=Homo sapiens, GI4501859, Length=304, Percent_Identity=33.2236842105263, Blast_Score=163, Evalue=4e-40,
Organism=Homo sapiens, GI76496475, Length=402, Percent_Identity=27.6119402985075, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI4557235, Length=402, Percent_Identity=27.6119402985075, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI7656849, Length=304, Percent_Identity=28.2894736842105, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI226958412, Length=406, Percent_Identity=23.8916256157635, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI226958414, Length=302, Percent_Identity=26.8211920529801, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI21361497, Length=334, Percent_Identity=30.2395209580838, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI4501857, Length=324, Percent_Identity=29.9382716049383, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI4503943, Length=311, Percent_Identity=23.7942122186495, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI7669494, Length=275, Percent_Identity=23.6363636363636, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI48976061, Length=362, Percent_Identity=22.0994475138122, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI211971008, Length=362, Percent_Identity=22.0994475138122, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI87081958, Length=313, Percent_Identity=25.2396166134185, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786223, Length=301, Percent_Identity=24.2524916943522, Blast_Score=88, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17534899, Length=422, Percent_Identity=33.6492890995261, Blast_Score=195, Evalue=4e-50,
Organism=Caenorhabditis elegans, GI17569725, Length=422, Percent_Identity=33.4123222748815, Blast_Score=189, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI17570075, Length=423, Percent_Identity=32.387706855792, Blast_Score=171, Evalue=9e-43,
Organism=Caenorhabditis elegans, GI17506239, Length=306, Percent_Identity=32.3529411764706, Blast_Score=142, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17508101, Length=417, Percent_Identity=27.5779376498801, Blast_Score=142, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17538396, Length=411, Percent_Identity=24.0875912408759, Blast_Score=123, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17533517, Length=289, Percent_Identity=27.681660899654, Blast_Score=117, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71985184, Length=408, Percent_Identity=25.4901960784314, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71990804, Length=252, Percent_Identity=30.952380952381, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI32563615, Length=179, Percent_Identity=33.5195530726257, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17534353, Length=310, Percent_Identity=23.8709677419355, Blast_Score=85, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17551932, Length=307, Percent_Identity=26.0586319218241, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71985192, Length=262, Percent_Identity=25.1908396946565, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71982178, Length=224, Percent_Identity=25.4464285714286, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17505929, Length=318, Percent_Identity=26.4150943396226, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24660351, Length=418, Percent_Identity=33.2535885167464, Blast_Score=185, Evalue=4e-47,
Organism=Drosophila melanogaster, GI21356377, Length=301, Percent_Identity=36.2126245847176, Blast_Score=183, Evalue=2e-46,
Organism=Drosophila melanogaster, GI24646207, Length=336, Percent_Identity=34.8214285714286, Blast_Score=174, Evalue=8e-44,
Organism=Drosophila melanogaster, GI24666513, Length=306, Percent_Identity=30.0653594771242, Blast_Score=142, Evalue=4e-34,
Organism=Drosophila melanogaster, GI281363737, Length=360, Percent_Identity=29.1666666666667, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI21355753, Length=414, Percent_Identity=24.8792270531401, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI19920834, Length=319, Percent_Identity=23.8244514106583, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 45826; Mature: 45695

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00072 ACYL_COA_DH_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDFKLSESIDTQRQMAQMVAEQMMRPVSRHFDEHEHDIPWDYINAMWPIMRQNPMFGA
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
VDKPETATDPSKPKKPKTGNVRMVHLIEALSWGDAGMYLTTPGGALGGAAVAAAGTNDQK
CCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCCEEEECCCCCCCCCEEEECCCCCHH
NRFLARFGESETPVWGSMAMTEPQAGSDTSAIRTTAVRDGDSWILNGEKIYCTGGRLSLE
HHHHHHCCCCCCCCCCCEECCCCCCCCCCHHEEEEEEECCCCEEECCCEEEEECCEEEEE
ESQGLVVVWATVDPKLGRAGMKAFVVEAGTPGMQVTKLEHKMGIRASDTAAVVFTDCRIP
CCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEHHHHCCCCCCCCEEEEEEECCCC
FDNVLGNPEIPKAEATAASADAPKGFKGAMKTFDATRPAVAASALGIARAALELLREQLS
HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAGIPIRDDVPVNEMSAIERDVLELEAQHKAAWLLTLKAAWMMDSGEANTVEASACKVKA
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEHHHEECCCCCCEEECCCEEEEC
GEAATVITQKAVELLGPLGYTRELLAEKWMRDAKINDIFEGTGQINRLIIARRILGFSSR
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHCCCCC
ELK
CCC
>Mature Secondary Structure 
AIDFKLSESIDTQRQMAQMVAEQMMRPVSRHFDEHEHDIPWDYINAMWPIMRQNPMFGA
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
VDKPETATDPSKPKKPKTGNVRMVHLIEALSWGDAGMYLTTPGGALGGAAVAAAGTNDQK
CCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCCEEEECCCCCCCCCEEEECCCCCHH
NRFLARFGESETPVWGSMAMTEPQAGSDTSAIRTTAVRDGDSWILNGEKIYCTGGRLSLE
HHHHHHCCCCCCCCCCCEECCCCCCCCCCHHEEEEEEECCCCEEECCCEEEEECCEEEEE
ESQGLVVVWATVDPKLGRAGMKAFVVEAGTPGMQVTKLEHKMGIRASDTAAVVFTDCRIP
CCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEHHHHCCCCCCCCEEEEEEECCCC
FDNVLGNPEIPKAEATAASADAPKGFKGAMKTFDATRPAVAASALGIARAALELLREQLS
HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAGIPIRDDVPVNEMSAIERDVLELEAQHKAAWLLTLKAAWMMDSGEANTVEASACKVKA
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEHHHEECCCCCCEEECCCEEEEC
GEAATVITQKAVELLGPLGYTRELLAEKWMRDAKINDIFEGTGQINRLIIARRILGFSSR
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHCCCCC
ELK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]