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The map label for this gene is rbsR [H]

Identifier: 159897421

GI number: 159897421

Start: 1019600

End: 1020640

Strand: Reverse

Name: rbsR [H]

Synonym: Haur_0892

Alternate gene names: 159897421

Gene position: 1020640-1019600 (Counterclockwise)

Preceding gene: 159897423

Following gene: 159897420

Centisome position: 16.08

GC content: 50.62

Gene sequence:

>1041_bases
ATGACACAGCGGATCACGATGGAAGACATTGCGCGGCAAAGCGGTGTCTCGTTGGCAACAGTTTCATTAGTATTACGCGA
CAAGCCTGGGATTAACGACGAGACACGCCGCCGCGTGTTGGATATTGCCCGTGATCTTGGTTATCGCAAGCGCTTGAATC
ATGAGAAGTTGGTTTCGCAATCGTTGCACAACGCAGGCGTAATTGTTAAGGCCTCAATTGGCGACGATAGCCCACTGACC
AACCCGTTTTATGCCCCGATTGTCGCAGGTATCGAGGCCGCCTGTCGCAAAATGCATATTAACTTAATGTATGCCACTGT
GCCAGTTGATATGGATAATCATCCTCAAGAGATGCCCCGTTTGCTCTCGGAAGATCACCTTGATGGGGTATTGTTAGTTG
GCGCATTCGCCGATGCAACCATCACCAAGCTTTTGCAACGTGAGGGCATTCCGGCGGTTTTGGTCGATGGCTACTCACAC
GAACATGTCTACGATTCAGTTGTTTCAGATAACTTCCGCGCAGCCTATGAAGCAGTCAGCTATCTGATTAGCTACGGGCA
TCGTCATATTGGCCTGATTGGGACAACCAAAGAGGCCTACCCTAGCATTGCCGAACGGCGCAAAGGCTATATTCAAGCCT
TAACCGATCATGGCATTCATGATCAGTATTTTGGTGATTGCTTGCTCACAATGCACGAAGGCAGCGATACATCGAGCATT
CTGTTGCAGCGCCATCCGCAAATTACCGCGCTGTTTTGTGCCAACGATATGATGGCGATTGGTGCAACCCAAGCCGCGCG
GGCGTTGCATCGCCAAATTCCCCAAGATTTATCAATTATTGGTTTCGATAATATTGATCTGGCTCAGCATGTTGCGCCAG
CGCTTACCACAATGCATGTCGATAAAGTCAGCATGGGGCGCTTTGCGGTGCAATTGTTAGCCAATCGAGCCGAATACCCA
GACCAGGCTCCGGCGACAGTCTCGCTGCGGCCACGGCTGCTTGAACGCCAATCAGTTCAACGTTTGCAACCACCAAAGTA
G

Upstream 100 bases:

>100_bases
GCTGAAACTATTCTAAATTTTTCAATAAAGTTGCTTGATAACCAAAGCGTTATTTTATGGCATCATGAGAGCCTATTCAA
AGGTGACTAGGAGAACATGT

Downstream 100 bases:

>100_bases
GTTGCCTTGTAGGAGTATCAGCTATGGAAGCAGCGACGCTTCAATCCACAACCATCCTTGGAAGTGCGCTCCCCTCAATT
CCATGGGAAGAACGTCCGGT

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MTQRITMEDIARQSGVSLATVSLVLRDKPGINDETRRRVLDIARDLGYRKRLNHEKLVSQSLHNAGVIVKASIGDDSPLT
NPFYAPIVAGIEAACRKMHINLMYATVPVDMDNHPQEMPRLLSEDHLDGVLLVGAFADATITKLLQREGIPAVLVDGYSH
EHVYDSVVSDNFRAAYEAVSYLISYGHRHIGLIGTTKEAYPSIAERRKGYIQALTDHGIHDQYFGDCLLTMHEGSDTSSI
LLQRHPQITALFCANDMMAIGATQAARALHRQIPQDLSIIGFDNIDLAQHVAPALTTMHVDKVSMGRFAVQLLANRAEYP
DQAPATVSLRPRLLERQSVQRLQPPK

Sequences:

>Translated_346_residues
MTQRITMEDIARQSGVSLATVSLVLRDKPGINDETRRRVLDIARDLGYRKRLNHEKLVSQSLHNAGVIVKASIGDDSPLT
NPFYAPIVAGIEAACRKMHINLMYATVPVDMDNHPQEMPRLLSEDHLDGVLLVGAFADATITKLLQREGIPAVLVDGYSH
EHVYDSVVSDNFRAAYEAVSYLISYGHRHIGLIGTTKEAYPSIAERRKGYIQALTDHGIHDQYFGDCLLTMHEGSDTSSI
LLQRHPQITALFCANDMMAIGATQAARALHRQIPQDLSIIGFDNIDLAQHVAPALTTMHVDKVSMGRFAVQLLANRAEYP
DQAPATVSLRPRLLERQSVQRLQPPK
>Mature_345_residues
TQRITMEDIARQSGVSLATVSLVLRDKPGINDETRRRVLDIARDLGYRKRLNHEKLVSQSLHNAGVIVKASIGDDSPLTN
PFYAPIVAGIEAACRKMHINLMYATVPVDMDNHPQEMPRLLSEDHLDGVLLVGAFADATITKLLQREGIPAVLVDGYSHE
HVYDSVVSDNFRAAYEAVSYLISYGHRHIGLIGTTKEAYPSIAERRKGYIQALTDHGIHDQYFGDCLLTMHEGSDTSSIL
LQRHPQITALFCANDMMAIGATQAARALHRQIPQDLSIIGFDNIDLAQHVAPALTTMHVDKVSMGRFAVQLLANRAEYPD
QAPATVSLRPRLLERQSVQRLQPPK

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=317, Percent_Identity=34.0694006309148, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787948, Length=338, Percent_Identity=27.810650887574, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1790194, Length=339, Percent_Identity=29.7935103244838, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1788474, Length=346, Percent_Identity=28.3236994219653, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790715, Length=328, Percent_Identity=25.3048780487805, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789456, Length=326, Percent_Identity=29.1411042944785, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1789068, Length=303, Percent_Identity=26.4026402640264, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI48994940, Length=334, Percent_Identity=27.2455089820359, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787906, Length=294, Percent_Identity=27.5510204081633, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1789202, Length=345, Percent_Identity=28.1159420289855, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787580, Length=317, Percent_Identity=26.4984227129338, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790689, Length=347, Percent_Identity=25.9365994236311, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38369; Mature: 38238

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQRITMEDIARQSGVSLATVSLVLRDKPGINDETRRRVLDIARDLGYRKRLNHEKLVSQ
CCCCCCHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHCCHHHHHHH
SLHNAGVIVKASIGDDSPLTNPFYAPIVAGIEAACRKMHINLMYATVPVDMDNHPQEMPR
HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHH
LLSEDHLDGVLLVGAFADATITKLLQREGIPAVLVDGYSHEHVYDSVVSDNFRAAYEAVS
HHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHH
YLISYGHRHIGLIGTTKEAYPSIAERRKGYIQALTDHGIHDQYFGDCLLTMHEGSDTSSI
HHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEEECCCCCHHH
LLQRHPQITALFCANDMMAIGATQAARALHRQIPQDLSIIGFDNIDLAQHVAPALTTMHV
HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHH
DKVSMGRFAVQLLANRAEYPDQAPATVSLRPRLLERQSVQRLQPPK
HHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TQRITMEDIARQSGVSLATVSLVLRDKPGINDETRRRVLDIARDLGYRKRLNHEKLVSQ
CCCCCHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHCCHHHHHHH
SLHNAGVIVKASIGDDSPLTNPFYAPIVAGIEAACRKMHINLMYATVPVDMDNHPQEMPR
HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCHHHHHH
LLSEDHLDGVLLVGAFADATITKLLQREGIPAVLVDGYSHEHVYDSVVSDNFRAAYEAVS
HHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHH
YLISYGHRHIGLIGTTKEAYPSIAERRKGYIQALTDHGIHDQYFGDCLLTMHEGSDTSSI
HHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEEECCCCCHHH
LLQRHPQITALFCANDMMAIGATQAARALHRQIPQDLSIIGFDNIDLAQHVAPALTTMHV
HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHH
DKVSMGRFAVQLLANRAEYPDQAPATVSLRPRLLERQSVQRLQPPK
HHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]