Click here to switch to the map view.

The map label for this gene is yqfA [H]

Identifier: 159897336

GI number: 159897336

Start: 912148

End: 912810

Strand: Reverse

Name: yqfA [H]

Synonym: Haur_0807

Alternate gene names: 159897336

Gene position: 912810-912148 (Counterclockwise)

Preceding gene: 159897338

Following gene: 159897335

Centisome position: 14.38

GC content: 47.96

Gene sequence:

>663_bases
ATGGCAAAAGCAATTGAAGAACGCAACGTCCACTACTCCGAATATTCCGCCGCCGAAGAATTAGCCAATGCAATTACCCA
TGGGATTGGGGTTGCCTTGAGCGTGGCTGGCTTGGCGATTTTGCTGATTATGGCGATTAACACGGGCGATCCATGGCGAA
TTGCTAGCTTTACGGTCTATGGAGTCAGCCTAATTTGTATGTATTTGGCTTCGACGCTCTACCACAGCATTCGCAACCCT
CGCGCCAAATATTTATTGAAAATTTTCGACCACTGCGCTATTTATTTATTGATTGCTGGCACCTACACCCCGATTTTGTT
GGTGAGCATGCAAAGTAGCTTGGCTTGGACGCTCTTTGGCTTAATTTGGGGCTGTGCCTTCGCCGGAATCTGCTTTAAAA
TGTTTTTTATCAAACGTTTTGAATTGCTTTCAACCTTGATGTATGTTGGCATGGGCTGGTTATCGGTGATGGCCTGGGAT
GATTTAGTGGCGAGCTTGCCGACTGGAGCCTTTGCCTTGTTGGTGGCTGGTGGTCTGACCTACACTGCTGGCGTGGTCTT
TTATCGCTGGGAAAAATTGCCCTACAACCACGCAATTTGGCATGGCTTTGTGATGGGCGGCAGCGTTTGCCATTTCTTGG
TAATGGCGCTGTATCTCGGTTAA

Upstream 100 bases:

>100_bases
ACTGTGGCTAGCCCAAAAGAACTATACCTTTCACTGCAAAGTACCTTGCATTACAAGGTATAATAGCAACCAGCAAAAAC
ATAGCTTAGCTGGAGGTCAT

Downstream 100 bases:

>100_bases
ACTCCAAGTTTAATTGACCGAATTTGGCTCAGCATGCAGTAATCTGCTTGGCTGGGCTATTTTTTTGCTAGGCTTTTTGC
CAATTTGCCAGTATTATGGC

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAKAIEERNVHYSEYSAAEELANAITHGIGVALSVAGLAILLIMAINTGDPWRIASFTVYGVSLICMYLASTLYHSIRNP
RAKYLLKIFDHCAIYLLIAGTYTPILLVSMQSSLAWTLFGLIWGCAFAGICFKMFFIKRFELLSTLMYVGMGWLSVMAWD
DLVASLPTGAFALLVAGGLTYTAGVVFYRWEKLPYNHAIWHGFVMGGSVCHFLVMALYLG

Sequences:

>Translated_220_residues
MAKAIEERNVHYSEYSAAEELANAITHGIGVALSVAGLAILLIMAINTGDPWRIASFTVYGVSLICMYLASTLYHSIRNP
RAKYLLKIFDHCAIYLLIAGTYTPILLVSMQSSLAWTLFGLIWGCAFAGICFKMFFIKRFELLSTLMYVGMGWLSVMAWD
DLVASLPTGAFALLVAGGLTYTAGVVFYRWEKLPYNHAIWHGFVMGGSVCHFLVMALYLG
>Mature_219_residues
AKAIEERNVHYSEYSAAEELANAITHGIGVALSVAGLAILLIMAINTGDPWRIASFTVYGVSLICMYLASTLYHSIRNPR
AKYLLKIFDHCAIYLLIAGTYTPILLVSMQSSLAWTLFGLIWGCAFAGICFKMFFIKRFELLSTLMYVGMGWLSVMAWDD
LVASLPTGAFALLVAGGLTYTAGVVFYRWEKLPYNHAIWHGFVMGGSVCHFLVMALYLG

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=227, Percent_Identity=29.9559471365639, Blast_Score=94, Evalue=8e-20,
Organism=Homo sapiens, GI154759277, Length=251, Percent_Identity=27.0916334661355, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI52630445, Length=210, Percent_Identity=27.6190476190476, Blast_Score=78, Evalue=8e-15,
Organism=Escherichia coli, GI1789266, Length=215, Percent_Identity=50.2325581395349, Blast_Score=217, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI71996356, Length=226, Percent_Identity=28.7610619469027, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640324, Length=242, Percent_Identity=28.5123966942149, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24320; Mature: 24189

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAIEERNVHYSEYSAAEELANAITHGIGVALSVAGLAILLIMAINTGDPWRIASFTVY
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
GVSLICMYLASTLYHSIRNPRAKYLLKIFDHCAIYLLIAGTYTPILLVSMQSSLAWTLFG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LIWGCAFAGICFKMFFIKRFELLSTLMYVGMGWLSVMAWDDLVASLPTGAFALLVAGGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH
YTAGVVFYRWEKLPYNHAIWHGFVMGGSVCHFLVMALYLG
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKAIEERNVHYSEYSAAEELANAITHGIGVALSVAGLAILLIMAINTGDPWRIASFTVY
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
GVSLICMYLASTLYHSIRNPRAKYLLKIFDHCAIYLLIAGTYTPILLVSMQSSLAWTLFG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LIWGCAFAGICFKMFFIKRFELLSTLMYVGMGWLSVMAWDDLVASLPTGAFALLVAGGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHH
YTAGVVFYRWEKLPYNHAIWHGFVMGGSVCHFLVMALYLG
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]