Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is cheW [H]
Identifier: 159897251
GI number: 159897251
Start: 830680
End: 831111
Strand: Direct
Name: cheW [H]
Synonym: Haur_0722
Alternate gene names: 159897251
Gene position: 830680-831111 (Clockwise)
Preceding gene: 159897250
Following gene: 159897252
Centisome position: 13.09
GC content: 50.23
Gene sequence:
>432_bases GTGAGCCAAGTTGAGGATCAATTGGCGCAATTTGTGGTTTTTATCCTCGATCAAGAACGGTTTGCTTTGCCAGTTGAGCA GGCGCGTGGCATCGAACGTTGGCGTAATCCAACTCGCATTCCAGGCACTGCGACGGCAATTATGGGTATTATCAATCAAC GTGGGGTGCTGCTGACGGTGGTTGATATGCGGGTGGTTTTAGGCATGAAGCCAATTACCCCAACTCGGCGTAGTCGTTTT TTGCTCGTTCACGAACAGATTGATTGTGCAATTGCGGTTGATCAGGTGATCGATATGTTGACCTTGGATGTGGGTTTGGC CGAGCCAACTCCCCATCGTGGAACGGTCGCGAGCCGAGGTTTGCTGCCAACGCCATTTGGGTTTGCAACTTGGCTTGATC TTAATGCTCTACTTGGGTCGATCAATGGTTAA
Upstream 100 bases:
>100_bases ACGATTTGCTGCTTTAGAACGCGCCATTTGTGATGATTCAATGCTTGGTTGCTGCTCAATTGAGCCACACAACCATTATT GAATCATGCGGGAGCCTATT
Downstream 100 bases:
>100_bases TCCAGTCATTGTCAGCGATCTTTATCCAGTTAATGTTGGCGATCAAACGGTCTTGATTCGCCAAACCGCCTTGGTTGGTG TGGATTATGTTGCCAATAGC
Product: CheW protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MSQVEDQLAQFVVFILDQERFALPVEQARGIERWRNPTRIPGTATAIMGIINQRGVLLTVVDMRVVLGMKPITPTRRSRF LLVHEQIDCAIAVDQVIDMLTLDVGLAEPTPHRGTVASRGLLPTPFGFATWLDLNALLGSING
Sequences:
>Translated_143_residues MSQVEDQLAQFVVFILDQERFALPVEQARGIERWRNPTRIPGTATAIMGIINQRGVLLTVVDMRVVLGMKPITPTRRSRF LLVHEQIDCAIAVDQVIDMLTLDVGLAEPTPHRGTVASRGLLPTPFGFATWLDLNALLGSING >Mature_142_residues SQVEDQLAQFVVFILDQERFALPVEQARGIERWRNPTRIPGTATAIMGIINQRGVLLTVVDMRVVLGMKPITPTRRSRFL LVHEQIDCAIAVDQVIDMLTLDVGLAEPTPHRGTVASRGLLPTPFGFATWLDLNALLGSING
Specific function: Involved in the transmission of sensory signals from the chemoreceptors to the flagellar motors [H]
COG id: COG0835
COG function: function code NT; Chemotaxis signal transduction protein
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cheW-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002545 [H]
Pfam domain/function: PF01584 CheW [H]
EC number: NA
Molecular weight: Translated: 15787; Mature: 15656
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS50851 CHEW
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQVEDQLAQFVVFILDQERFALPVEQARGIERWRNPTRIPGTATAIMGIINQRGVLLTV CCHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEH VDMRVVLGMKPITPTRRSRFLLVHEQIDCAIAVDQVIDMLTLDVGLAEPTPHRGTVASRG HHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC LLPTPFGFATWLDLNALLGSING CCCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure SQVEDQLAQFVVFILDQERFALPVEQARGIERWRNPTRIPGTATAIMGIINQRGVLLTV CHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEH VDMRVVLGMKPITPTRRSRFLLVHEQIDCAIAVDQVIDMLTLDVGLAEPTPHRGTVASRG HHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC LLPTPFGFATWLDLNALLGSING CCCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1601874; 9384377 [H]