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The map label for this gene is sodA [H]

Identifier: 159897233

GI number: 159897233

Start: 811725

End: 812327

Strand: Direct

Name: sodA [H]

Synonym: Haur_0704

Alternate gene names: 159897233

Gene position: 811725-812327 (Clockwise)

Preceding gene: 159897231

Following gene: 159897234

Centisome position: 12.79

GC content: 51.41

Gene sequence:

>603_bases
ATGGCTTTTGAACTGCCAGCGTTGCCCTATGCAACCGATGCCTTAGAAAAAGCAATCGATGCGCAAACCATGGAAATTCA
CCATGGCAAGCACCACGCTGCCTATGTGAATAACCTCAACGCTGCCTTGGAAAAATATCCCGAATTGCAAAGCAAATCAT
TGCACGAGTTGATCAGCGATTTGAACAGCTTGCCCGAAGATATTCGCACCGCTGTGCGCAATAACGGCGGCGGCCATGCC
AACCACAGTTTGTTCTGGAACATCCTCAGCCCAAACGGCGGCGGCGAACCAACCGGCAAACTTGGCGATGAAATCAACGC
GACCTTTGGCTCACTCGATGCCTTCAAGGAACAATTTGCCAAGGCTGCAACCACTCGCTTCGGCTCAGGCTGGGCTTGGT
TGATTCGCACTAGCGAAGGTAAATTGGCCGTAACCAGCACCGCCAACCAAGACTCACCAGTCATGGAAGGCCAAACTCCC
TTGTTGGGCTTGGATGTTTGGGAACACGCCTACTACTTGCGCTACCAAAATCGCCGCCCCGACTACATCAAAACGTGGTG
GGAAGTGTTGGATTGGAACAAAGTTGCTGAAAACGATAAGTAA

Upstream 100 bases:

>100_bases
TTGTGCATCAAGCATGGCCCAACTTCTGCTACAATAGAAGTGGGAACCGTGTGTTGATGCGTGCAAAGTCGCATCCTTGA
GATCAAAAGGAGTCCATACA

Downstream 100 bases:

>100_bases
GCCTGATTAACCACAGGTTTGAGCACGGGTGGTTGTTGCCATCCGTGCTTTTGAGTTAAGGAGGATACAAATGGCGTTTT
GGTTGCTCAAAACTGAGCCA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MAFELPALPYATDALEKAIDAQTMEIHHGKHHAAYVNNLNAALEKYPELQSKSLHELISDLNSLPEDIRTAVRNNGGGHA
NHSLFWNILSPNGGGEPTGKLGDEINATFGSLDAFKEQFAKAATTRFGSGWAWLIRTSEGKLAVTSTANQDSPVMEGQTP
LLGLDVWEHAYYLRYQNRRPDYIKTWWEVLDWNKVAENDK

Sequences:

>Translated_200_residues
MAFELPALPYATDALEKAIDAQTMEIHHGKHHAAYVNNLNAALEKYPELQSKSLHELISDLNSLPEDIRTAVRNNGGGHA
NHSLFWNILSPNGGGEPTGKLGDEINATFGSLDAFKEQFAKAATTRFGSGWAWLIRTSEGKLAVTSTANQDSPVMEGQTP
LLGLDVWEHAYYLRYQNRRPDYIKTWWEVLDWNKVAENDK
>Mature_199_residues
AFELPALPYATDALEKAIDAQTMEIHHGKHHAAYVNNLNAALEKYPELQSKSLHELISDLNSLPEDIRTAVRNNGGGHAN
HSLFWNILSPNGGGEPTGKLGDEINATFGSLDAFKEQFAKAATTRFGSGWAWLIRTSEGKLAVTSTANQDSPVMEGQTPL
LGLDVWEHAYYLRYQNRRPDYIKTWWEVLDWNKVAENDK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=197, Percent_Identity=50.761421319797, Blast_Score=191, Evalue=5e-49,
Organism=Homo sapiens, GI67782305, Length=197, Percent_Identity=50.761421319797, Blast_Score=191, Evalue=5e-49,
Organism=Homo sapiens, GI67782309, Length=196, Percent_Identity=40.3061224489796, Blast_Score=134, Evalue=7e-32,
Organism=Escherichia coli, GI1790342, Length=202, Percent_Identity=57.4257425742574, Blast_Score=232, Evalue=1e-62,
Organism=Escherichia coli, GI1787946, Length=198, Percent_Identity=50.5050505050505, Blast_Score=203, Evalue=5e-54,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=46.1928934010152, Blast_Score=166, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17569479, Length=195, Percent_Identity=44.6153846153846, Blast_Score=165, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6321796, Length=203, Percent_Identity=41.3793103448276, Blast_Score=138, Evalue=5e-34,
Organism=Drosophila melanogaster, GI17136812, Length=194, Percent_Identity=43.8144329896907, Blast_Score=158, Evalue=2e-39,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22350; Mature: 22219

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPALPYATDALEKAIDAQTMEIHHGKHHAAYVNNLNAALEKYPELQSKSLHELISD
CCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LNSLPEDIRTAVRNNGGGHANHSLFWNILSPNGGGEPTGKLGDEINATFGSLDAFKEQFA
HHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KAATTRFGSGWAWLIRTSEGKLAVTSTANQDSPVMEGQTPLLGLDVWEHAYYLRYQNRRP
HHHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHEEECCCCC
DYIKTWWEVLDWNKVAENDK
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AFELPALPYATDALEKAIDAQTMEIHHGKHHAAYVNNLNAALEKYPELQSKSLHELISD
CCCCCCCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LNSLPEDIRTAVRNNGGGHANHSLFWNILSPNGGGEPTGKLGDEINATFGSLDAFKEQFA
HHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KAATTRFGSGWAWLIRTSEGKLAVTSTANQDSPVMEGQTPLLGLDVWEHAYYLRYQNRRP
HHHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHEEECCCCC
DYIKTWWEVLDWNKVAENDK
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]