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The map label for this gene is xerC [H]

Identifier: 159897174

GI number: 159897174

Start: 743593

End: 744579

Strand: Direct

Name: xerC [H]

Synonym: Haur_0645

Alternate gene names: 159897174

Gene position: 743593-744579 (Clockwise)

Preceding gene: 159897172

Following gene: 159897175

Centisome position: 11.72

GC content: 56.13

Gene sequence:

>987_bases
ATGCACGATGATTTTTCACTCGCATTAACCACCCTTGCCGCAACTACCCCAACCGCAATCCAATCAACGACTAATCCCTT
CATTGCCTATATCGCCAGTCTGCAAAGTACCAATAGTCAACGCACGATGGAGAAGCAGCTGCATCGTTTGGCAACAATGA
TGGGCTTTGCCGATGCGCATGCAGTTCCGTGGTCGCAGCTGCGGGTTGAACATACCCAAGCCTTGTGGGCCAAGCTCGCC
AGCAGTAAATCAGCAGCCACTGCCAACCTGATACTCTCGGCCTTGCGCGGGGTGCTGAAGATGGCGTGGCGCATGGGCTT
AATGACTGGGGAAGATTACACACGAGCGGTTGATCTCAAAACGGTCAAAGGGAACGCACCTGATGCCGCAGCGGGCCGAT
CGCTCACCGCTGCCGAACTCCGCGCCTTATTTGCCGCGTGTGCCGCTGATTCATCACCCATTGGGCGGCGTGATGCAGCG
ATTCTAGCATTGGCCTATGCTGGTGGTGGTTTGCGTCGGGCCGAGATCGTCAATCTCGATCTGTCAGACTTCAATCCTGA
AACGGCGATGCTGACGATTCGCGGGAAGGGCAATAAAGTGCGGACGGCGTATGTGCGTGGTGGCGCTCGTGAGGCGCTCG
ACGAGTGGTTGGCGGTGCGTGGCGACGAAGCTGGGCCACTGTTTTGGCGGTTACAAGCTGGCGGTGTGGCAGGCCAAATG
TACGAGCGTCTCAGTGATCAGGCGATTTATATTTTATGTCAGCGGCGTGGCAAAGAGGCCAATGTACGGCATTTCAGCCC
GCACGATATTCGACGAACCTTTATCAGTGATCAACTGGATGCGGGAACCGATGTCTTGACCGTGGCTCGGCTGGCTGGCC
ATAGCAATGCCAACACCACCAGCCGCTACGATCGTCGGGGTGAACGGGCCAAACAAGCAGCAGCTGATGCTCTGCATGTG
CCGTTTATTTCGCAACAGGAGTTGTAA

Upstream 100 bases:

>100_bases
GATGACCAGCCAGCAGTTCAAATCAGGCTGTTGGCGGATGTTTTTTTAGCGCGAAACGGTTATGATAATGCACATTATAC
AAACCGCTGGAGAGTCGAGC

Downstream 100 bases:

>100_bases
CATTGCTTCGATCATGGCGTATCACTTGACGAATATTCAAGAGTCATTACACTAGAGATCTATCATCACTGAGAGATGCT
ATCTCACGTTTATCACACAC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MHDDFSLALTTLAATTPTAIQSTTNPFIAYIASLQSTNSQRTMEKQLHRLATMMGFADAHAVPWSQLRVEHTQALWAKLA
SSKSAATANLILSALRGVLKMAWRMGLMTGEDYTRAVDLKTVKGNAPDAAAGRSLTAAELRALFAACAADSSPIGRRDAA
ILALAYAGGGLRRAEIVNLDLSDFNPETAMLTIRGKGNKVRTAYVRGGAREALDEWLAVRGDEAGPLFWRLQAGGVAGQM
YERLSDQAIYILCQRRGKEANVRHFSPHDIRRTFISDQLDAGTDVLTVARLAGHSNANTTSRYDRRGERAKQAAADALHV
PFISQQEL

Sequences:

>Translated_328_residues
MHDDFSLALTTLAATTPTAIQSTTNPFIAYIASLQSTNSQRTMEKQLHRLATMMGFADAHAVPWSQLRVEHTQALWAKLA
SSKSAATANLILSALRGVLKMAWRMGLMTGEDYTRAVDLKTVKGNAPDAAAGRSLTAAELRALFAACAADSSPIGRRDAA
ILALAYAGGGLRRAEIVNLDLSDFNPETAMLTIRGKGNKVRTAYVRGGAREALDEWLAVRGDEAGPLFWRLQAGGVAGQM
YERLSDQAIYILCQRRGKEANVRHFSPHDIRRTFISDQLDAGTDVLTVARLAGHSNANTTSRYDRRGERAKQAAADALHV
PFISQQEL
>Mature_328_residues
MHDDFSLALTTLAATTPTAIQSTTNPFIAYIASLQSTNSQRTMEKQLHRLATMMGFADAHAVPWSQLRVEHTQALWAKLA
SSKSAATANLILSALRGVLKMAWRMGLMTGEDYTRAVDLKTVKGNAPDAAAGRSLTAAELRALFAACAADSSPIGRRDAA
ILALAYAGGGLRRAEIVNLDLSDFNPETAMLTIRGKGNKVRTAYVRGGAREALDEWLAVRGDEAGPLFWRLQAGGVAGQM
YERLSDQAIYILCQRRGKEANVRHFSPHDIRRTFISDQLDAGTDVLTVARLAGHSNANTTSRYDRRGERAKQAAADALHV
PFISQQEL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=312, Percent_Identity=24.3589743589744, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35595; Mature: 35595

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS00014 ER_TARGET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDDFSLALTTLAATTPTAIQSTTNPFIAYIASLQSTNSQRTMEKQLHRLATMMGFADAH
CCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
AVPWSQLRVEHTQALWAKLASSKSAATANLILSALRGVLKMAWRMGLMTGEDYTRAVDLK
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
TVKGNAPDAAAGRSLTAAELRALFAACAADSSPIGRRDAAILALAYAGGGLRRAEIVNLD
EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEE
LSDFNPETAMLTIRGKGNKVRTAYVRGGAREALDEWLAVRGDEAGPLFWRLQAGGVAGQM
CCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH
YERLSDQAIYILCQRRGKEANVRHFSPHDIRRTFISDQLDAGTDVLTVARLAGHSNANTT
HHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
SRYDRRGERAKQAAADALHVPFISQQEL
HHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MHDDFSLALTTLAATTPTAIQSTTNPFIAYIASLQSTNSQRTMEKQLHRLATMMGFADAH
CCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
AVPWSQLRVEHTQALWAKLASSKSAATANLILSALRGVLKMAWRMGLMTGEDYTRAVDLK
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
TVKGNAPDAAAGRSLTAAELRALFAACAADSSPIGRRDAAILALAYAGGGLRRAEIVNLD
EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEE
LSDFNPETAMLTIRGKGNKVRTAYVRGGAREALDEWLAVRGDEAGPLFWRLQAGGVAGQM
CCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH
YERLSDQAIYILCQRRGKEANVRHFSPHDIRRTFISDQLDAGTDVLTVARLAGHSNANTT
HHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
SRYDRRGERAKQAAADALHVPFISQQEL
HHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA