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The map label for this gene is yddE [C]

Identifier: 159897111

GI number: 159897111

Start: 670030

End: 670908

Strand: Direct

Name: yddE [C]

Synonym: Haur_0582

Alternate gene names: 159897111

Gene position: 670030-670908 (Clockwise)

Preceding gene: 159897102

Following gene: 159897115

Centisome position: 10.56

GC content: 51.65

Gene sequence:

>879_bases
ATGCAGATTGAAGTGCAAATTGTCAATGCTTTTATTGATGGCGATGCAGGCGGTAATCCGGCTGGGGTGGTGTTGCAGGC
TGATGGTTTGAGTGCCGCGCAGAAATTGGCCGTGGCTCAGCAGGTTGGTTTATCTGAAACCGCCTTTGTGAGCAAATCGG
ATGTGGCGACGATTAAGCTAGAATTTTTTACCCCAACTCGCCAAATTGCCCATTGCGGCCATGCCACGATTGCTACATTT
AGTCTGTTGCGGCAACTCAACCGCGTGCCAACTGGTCAGCTTGCCAAAGAAACCATCGATGGTTTGCGCGAAATTATTGT
GGCCGATGATCAGGCCTTTATGCAGCAGCTGGCTCCGCGCTATCAAGCATTTGCGCTCACTGATCCAATCGCCCAACAGG
CTTTGCGGTCGCTCAACATCCCCAGCGGCGATTTACTGAGGGGCACTGTACCAACCTTGGTCAATACTGGCAATAGCTTT
TTGATTATTGGGCTGGCGAGTGAGCAAACGCTGGCAGAATTGCAACCCGATTTTGGGCAGATTCAGCAAATCAGTGAGCA
ACTCGATTTGATTGGCTACTATCTCTTTACGCCTGCCACCAAACAAGCTGGCCGCTCGGCTGGCACGCGCATGTTCGCGC
CACGCTATGGCATTCGTGAGGAAGCTGGCACGGGCATGGCAGCTGGCCCATTGGCTTGTTATTTGTACGATCAACTTGGC
TTACAACAAACCAGCTTTTTAATCGAGCAAGGTTGGCTAATGCAACCATCCTCGCCCAGCGTCATCGAGGTGCAACTCAG
CTTGGTTGATGGGGCAATTCAGAGCTTGTTGGCTGGTGGTCGGGCTAAAGTCATGCAAACATTGCAGGTTGAGCTATAG

Upstream 100 bases:

>100_bases
AAGCTTGTGATGGCGATAGCTTAAGTTTTTCGAAGGCTCGCTGATATTGTGCAAGCATACATACTCCCAAAGCTCTAAAA
TCTCTATTTAAGGAATTACT

Downstream 100 bases:

>100_bases
CAACTATTATTCAAGTAATTTTTTGAGTAATGCCTGCTGTTCTTCATACATTGCAATCGCTTGGCGAATTAACGCATCAG
CATAGCCCTGTAAAATCTGT

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MQIEVQIVNAFIDGDAGGNPAGVVLQADGLSAAQKLAVAQQVGLSETAFVSKSDVATIKLEFFTPTRQIAHCGHATIATF
SLLRQLNRVPTGQLAKETIDGLREIIVADDQAFMQQLAPRYQAFALTDPIAQQALRSLNIPSGDLLRGTVPTLVNTGNSF
LIIGLASEQTLAELQPDFGQIQQISEQLDLIGYYLFTPATKQAGRSAGTRMFAPRYGIREEAGTGMAAGPLACYLYDQLG
LQQTSFLIEQGWLMQPSSPSVIEVQLSLVDGAIQSLLAGGRAKVMQTLQVEL

Sequences:

>Translated_292_residues
MQIEVQIVNAFIDGDAGGNPAGVVLQADGLSAAQKLAVAQQVGLSETAFVSKSDVATIKLEFFTPTRQIAHCGHATIATF
SLLRQLNRVPTGQLAKETIDGLREIIVADDQAFMQQLAPRYQAFALTDPIAQQALRSLNIPSGDLLRGTVPTLVNTGNSF
LIIGLASEQTLAELQPDFGQIQQISEQLDLIGYYLFTPATKQAGRSAGTRMFAPRYGIREEAGTGMAAGPLACYLYDQLG
LQQTSFLIEQGWLMQPSSPSVIEVQLSLVDGAIQSLLAGGRAKVMQTLQVEL
>Mature_292_residues
MQIEVQIVNAFIDGDAGGNPAGVVLQADGLSAAQKLAVAQQVGLSETAFVSKSDVATIKLEFFTPTRQIAHCGHATIATF
SLLRQLNRVPTGQLAKETIDGLREIIVADDQAFMQQLAPRYQAFALTDPIAQQALRSLNIPSGDLLRGTVPTLVNTGNSF
LIIGLASEQTLAELQPDFGQIQQISEQLDLIGYYLFTPATKQAGRSAGTRMFAPRYGIREEAGTGMAAGPLACYLYDQLG
LQQTSFLIEQGWLMQPSSPSVIEVQLSLVDGAIQSLLAGGRAKVMQTLQVEL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=293, Percent_Identity=27.3037542662116, Blast_Score=110, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31278; Mature: 31278

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIEVQIVNAFIDGDAGGNPAGVVLQADGLSAAQKLAVAQQVGLSETAFVSKSDVATIKL
CEEEEEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHEECCCCEEEEEE
EFFTPTRQIAHCGHATIATFSLLRQLNRVPTGQLAKETIDGLREIIVADDQAFMQQLAPR
EEECCHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YQAFALTDPIAQQALRSLNIPSGDLLRGTVPTLVNTGNSFLIIGLASEQTLAELQPDFGQ
HHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCHHHHHHCCCHHH
IQQISEQLDLIGYYLFTPATKQAGRSAGTRMFAPRYGIREEAGTGMAAGPLACYLYDQLG
HHHHHHHHHHHHHHEECCCHHHHCHHCCCEEECCCCCCCHHCCCCCCCCHHHHHHHHHHC
LQQTSFLIEQGWLMQPSSPSVIEVQLSLVDGAIQSLLAGGRAKVMQTLQVEL
CHHHHHHHHCCCEECCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MQIEVQIVNAFIDGDAGGNPAGVVLQADGLSAAQKLAVAQQVGLSETAFVSKSDVATIKL
CEEEEEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHEECCCCEEEEEE
EFFTPTRQIAHCGHATIATFSLLRQLNRVPTGQLAKETIDGLREIIVADDQAFMQQLAPR
EEECCHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YQAFALTDPIAQQALRSLNIPSGDLLRGTVPTLVNTGNSFLIIGLASEQTLAELQPDFGQ
HHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCHHHHHHCCCHHH
IQQISEQLDLIGYYLFTPATKQAGRSAGTRMFAPRYGIREEAGTGMAAGPLACYLYDQLG
HHHHHHHHHHHHHHEECCCHHHHCHHCCCEEECCCCCCCHHCCCCCCCCHHHHHHHHHHC
LQQTSFLIEQGWLMQPSSPSVIEVQLSLVDGAIQSLLAGGRAKVMQTLQVEL
CHHHHHHHHCCCEECCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]