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The map label for this gene is rbfA [H]

Identifier: 159897009

GI number: 159897009

Start: 556534

End: 556914

Strand: Direct

Name: rbfA [H]

Synonym: Haur_0477

Alternate gene names: 159897009

Gene position: 556534-556914 (Clockwise)

Preceding gene: 159897008

Following gene: 159897010

Centisome position: 8.77

GC content: 45.41

Gene sequence:

>381_bases
ATGGCAAAAAACAAACGAGTTGAACAAGTTGCTGAAGAAATCAAAACGATTTTGAGCAACGCGATTCAATTTGAAATTCA
AGATCCGCGCTTGGGGTTTGTAACCCTCACCAGCGTCAATGTTAGCCCAGATTTGTATCATGCCAATATTAATGTGAGCG
TGATGGGCGATGATACAGCCCGTAAAGATTCGCTAGCAACGCTTGATCGAGCCAAGGGCTTTTTACGGCGTGAGCTTGGT
CAACAAATGAAACTGCGAGCCGTGCCTGAGCTACATTTCCATCTTGACGTGACGATTGATACCCGTCAATATATGGACAC
GCTGTTTAACCAAGTCGATGAGGAACGGCGGGTTAATCCACCCAAACTAGACGACGAATAA

Upstream 100 bases:

>100_bases
AAGCTGAATTAAATTCTAGCGTGGAGACAAATAGATCTGTTGGCGACAGCAGATATATTTGTCTCCATTCTGCATTATCA
CTACCGTGGGAGTGACTGTT

Downstream 100 bases:

>100_bases
GGATACCACGATGCTGTATACCACTATTCAACAAGCGGCTCCAGCCTTGCGTGAAGCCATGACCGCCGCACGCCACATTT
TGGTTACCTCGCATATCAAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MAKNKRVEQVAEEIKTILSNAIQFEIQDPRLGFVTLTSVNVSPDLYHANINVSVMGDDTARKDSLATLDRAKGFLRRELG
QQMKLRAVPELHFHLDVTIDTRQYMDTLFNQVDEERRVNPPKLDDE

Sequences:

>Translated_126_residues
MAKNKRVEQVAEEIKTILSNAIQFEIQDPRLGFVTLTSVNVSPDLYHANINVSVMGDDTARKDSLATLDRAKGFLRRELG
QQMKLRAVPELHFHLDVTIDTRQYMDTLFNQVDEERRVNPPKLDDE
>Mature_125_residues
AKNKRVEQVAEEIKTILSNAIQFEIQDPRLGFVTLTSVNVSPDLYHANINVSVMGDDTARKDSLATLDRAKGFLRRELGQ
QMKLRAVPELHFHLDVTIDTRQYMDTLFNQVDEERRVNPPKLDDE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=127, Percent_Identity=40.9448818897638, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 14482; Mature: 14350

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNKRVEQVAEEIKTILSNAIQFEIQDPRLGFVTLTSVNVSPDLYHANINVSVMGDDTA
CCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEECCCCCEEEECEEEEEECCCCC
RKDSLATLDRAKGFLRRELGQQMKLRAVPELHFHLDVTIDTRQYMDTLFNQVDEERRVNP
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHHHCCCC
PKLDDE
CCCCCC
>Mature Secondary Structure 
AKNKRVEQVAEEIKTILSNAIQFEIQDPRLGFVTLTSVNVSPDLYHANINVSVMGDDTA
CCCHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEECCCCCEEEECEEEEEECCCCC
RKDSLATLDRAKGFLRRELGQQMKLRAVPELHFHLDVTIDTRQYMDTLFNQVDEERRVNP
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHHHCCCC
PKLDDE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA