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The map label for this gene is ygcU [H]

Identifier: 159896890

GI number: 159896890

Start: 427529

End: 429130

Strand: Direct

Name: ygcU [H]

Synonym: Haur_0358

Alternate gene names: 159896890

Gene position: 427529-429130 (Clockwise)

Preceding gene: 159896889

Following gene: 159896891

Centisome position: 6.74

GC content: 54.49

Gene sequence:

>1602_bases
ATGCGCCGTTGGAATGGTTGGGGCGACGAGAGCAAAGAGTATCCGGTTAAAGCCGGCATTTTAGGCTTGCTCAAGCAATT
AATTGGTGCTGGCACGGCTCCCAGTGATGTTCGTTTGGCCGAGATTGTTGCCCAAGTTCCAGCATCACGCTTGCCACACC
ACGAATTGATCAGCACCGATCCTGAGTTGCGGATTCGCCATGCTCGTGGTCAGAGTTTCGCCGATTTGGTGGCTACCCGC
AGCGGCGAGCTAGGCCAAATTCCCGATGGCGTGGCGTTTCCCCAATCCAGCCAAGCAGTTCGCGAATTGATCGATTGGGC
TAGCGACAACAATGTTAGCCTGATTCCCTATGGCGGTGGAACCAGCGTTGCGGGGCATATTAATCCCGTTGCTGGCGAGC
GACCCATTTTAACTGTCAGCCTTGCCAAACTTAATCGGCTGATGGAAATCAATCCAACTGCGCGGCTAGCTCGCTTTGGC
GCTGGAATCAAAGGTCCAGATCTCGAAGCCCAATTACGGGCTTTGGGCTTTACGCTGGGCCATTTTCCCCAATCGTTTGA
GCTTTCGACGCTGGGCGGCTGGATTGCAACCCGCTCTAGTGGCCAGCAATCGCTTGGTTTTGGGCGGATTGAACAACTTT
GGGCAGGCGGGCGGGTTGAAACACCCCGAGGCTCGTTAGAATTAGCGCCCTTTCCGGCTTCGGCGGCTGGCCCTGACCTG
CGTGAAATGCTGCTTGGCTCAGAAGGTCGTTATGGCATTATCACCGAAGTCACTGTGCGAATCCGCCCAATTCCTGAGCT
TGATGTAGTCCATGCGATCTTTTTTGCAAATTGGGAGCAAGCCCAAACTGCCGCGCGAACAATCGCCCAAGCCAACCTAC
CATTGGGCATGTTGCGGCTTAGCACGCCCACCGAAACCATGACCAACCTTGCCTTGGCTGGCCATGAGCGGGTGATTGGT
TTGCTCGAAGGCTTTTTGAAATTGCGTGGGGTTGGCAGCGAAAAATGTCTGCTGTTGGTTGGCTTTATTGGCAGCCAAGC
TCAAGTGAAGCTCAGTCGTCAAGCGGTGTTGAGCTTGATGCGTCGGCATGGCGGCGTTCACATCGGCCAAAGCTTTGGCA
AAGCTTGGCAGGCTGGGCGCTTTCGTGCGCCGTATCTACGCAATCGGCTGTGGGAGTTGGGCTATGGCGTGGATACGGTC
GAAACCGCCACGACATGGGAGAATGTTACGCCATTGTTGAATAGATTGGAACATAGCTTGCGCCATGGATTAGCGGCTGA
GCACGAACAGGTGCATGTGTTCACCCATCTTTCACATTTTTACCCAACTGGCTCAAGCATCTACACAACCTATGCTTTTC
GGCTAGGCAACGATGCGCAGGCAACTTTAGCCCGTTGGCACGCCTTGAAAACCGCTGCAAGCCAAGCAATTGTGGCCGCA
GGCGGCACGATTAGCCATCAACATGGCGTGGGGCTTGATCATCGCCCCTATCTCGAAGCTGAAAAAGGCCGCTTAGGAAT
TGGCGCATTACAACAACTTGGCCAGCATTTCGACCCGCAGGGCTTGCTCAATCCCGCCAAATTATACGAGGATGGCCAAT
GA

Upstream 100 bases:

>100_bases
GCCGATTTAGCTCGCCAAGCCAGCCAATTCGCCATGCAGCAGAGCATCGAAGTTTGGCAATTGTTAGCCGCGAATATCAA
TAATACACAAAGGGGATAAT

Downstream 100 bases:

>100_bases
ATCCGCAGTTGCAATGGAACGCTGCTTGGCGCGAAACCACTTGGCAAGTGCTCGATCAAGCGTGGGATGTGATTATTATT
GGCGGTGGAATTACCGGCGC

Product: FAD linked oxidase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MRRWNGWGDESKEYPVKAGILGLLKQLIGAGTAPSDVRLAEIVAQVPASRLPHHELISTDPELRIRHARGQSFADLVATR
SGELGQIPDGVAFPQSSQAVRELIDWASDNNVSLIPYGGGTSVAGHINPVAGERPILTVSLAKLNRLMEINPTARLARFG
AGIKGPDLEAQLRALGFTLGHFPQSFELSTLGGWIATRSSGQQSLGFGRIEQLWAGGRVETPRGSLELAPFPASAAGPDL
REMLLGSEGRYGIITEVTVRIRPIPELDVVHAIFFANWEQAQTAARTIAQANLPLGMLRLSTPTETMTNLALAGHERVIG
LLEGFLKLRGVGSEKCLLLVGFIGSQAQVKLSRQAVLSLMRRHGGVHIGQSFGKAWQAGRFRAPYLRNRLWELGYGVDTV
ETATTWENVTPLLNRLEHSLRHGLAAEHEQVHVFTHLSHFYPTGSSIYTTYAFRLGNDAQATLARWHALKTAASQAIVAA
GGTISHQHGVGLDHRPYLEAEKGRLGIGALQQLGQHFDPQGLLNPAKLYEDGQ

Sequences:

>Translated_533_residues
MRRWNGWGDESKEYPVKAGILGLLKQLIGAGTAPSDVRLAEIVAQVPASRLPHHELISTDPELRIRHARGQSFADLVATR
SGELGQIPDGVAFPQSSQAVRELIDWASDNNVSLIPYGGGTSVAGHINPVAGERPILTVSLAKLNRLMEINPTARLARFG
AGIKGPDLEAQLRALGFTLGHFPQSFELSTLGGWIATRSSGQQSLGFGRIEQLWAGGRVETPRGSLELAPFPASAAGPDL
REMLLGSEGRYGIITEVTVRIRPIPELDVVHAIFFANWEQAQTAARTIAQANLPLGMLRLSTPTETMTNLALAGHERVIG
LLEGFLKLRGVGSEKCLLLVGFIGSQAQVKLSRQAVLSLMRRHGGVHIGQSFGKAWQAGRFRAPYLRNRLWELGYGVDTV
ETATTWENVTPLLNRLEHSLRHGLAAEHEQVHVFTHLSHFYPTGSSIYTTYAFRLGNDAQATLARWHALKTAASQAIVAA
GGTISHQHGVGLDHRPYLEAEKGRLGIGALQQLGQHFDPQGLLNPAKLYEDGQ
>Mature_533_residues
MRRWNGWGDESKEYPVKAGILGLLKQLIGAGTAPSDVRLAEIVAQVPASRLPHHELISTDPELRIRHARGQSFADLVATR
SGELGQIPDGVAFPQSSQAVRELIDWASDNNVSLIPYGGGTSVAGHINPVAGERPILTVSLAKLNRLMEINPTARLARFG
AGIKGPDLEAQLRALGFTLGHFPQSFELSTLGGWIATRSSGQQSLGFGRIEQLWAGGRVETPRGSLELAPFPASAAGPDL
REMLLGSEGRYGIITEVTVRIRPIPELDVVHAIFFANWEQAQTAARTIAQANLPLGMLRLSTPTETMTNLALAGHERVIG
LLEGFLKLRGVGSEKCLLLVGFIGSQAQVKLSRQAVLSLMRRHGGVHIGQSFGKAWQAGRFRAPYLRNRLWELGYGVDTV
ETATTWENVTPLLNRLEHSLRHGLAAEHEQVHVFTHLSHFYPTGSSIYTTYAFRLGNDAQATLARWHALKTAASQAIVAA
GGTISHQHGVGLDHRPYLEAEKGRLGIGALQQLGQHFDPQGLLNPAKLYEDGQ

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI4501993, Length=564, Percent_Identity=27.1276595744681, Blast_Score=219, Evalue=5e-57,
Organism=Homo sapiens, GI37595756, Length=489, Percent_Identity=26.1758691206544, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI37595754, Length=508, Percent_Identity=25.1968503937008, Blast_Score=100, Evalue=3e-21,
Organism=Escherichia coli, GI48994907, Length=452, Percent_Identity=23.4513274336283, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1789351, Length=483, Percent_Identity=23.8095238095238, Blast_Score=87, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17556096, Length=573, Percent_Identity=27.0506108202443, Blast_Score=220, Evalue=1e-57,
Organism=Caenorhabditis elegans, GI17534361, Length=185, Percent_Identity=26.4864864864865, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320027, Length=219, Percent_Identity=28.310502283105, Blast_Score=89, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6320023, Length=194, Percent_Identity=25.7731958762887, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6320764, Length=196, Percent_Identity=23.469387755102, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24653753, Length=561, Percent_Identity=28.5204991087344, Blast_Score=217, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 57825; Mature: 57825

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRWNGWGDESKEYPVKAGILGLLKQLIGAGTAPSDVRLAEIVAQVPASRLPHHELISTD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHCCCHHHHCCC
PELRIRHARGQSFADLVATRSGELGQIPDGVAFPQSSQAVRELIDWASDNNVSLIPYGGG
CCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCC
TSVAGHINPVAGERPILTVSLAKLNRLMEINPTARLARFGAGIKGPDLEAQLRALGFTLG
CCCCCCCCCCCCCCCEEEEEHHHHHHHEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH
HFPQSFELSTLGGWIATRSSGQQSLGFGRIEQLWAGGRVETPRGSLELAPFPASAAGPDL
CCCCCCEEHHHCCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCHHH
REMLLGSEGRYGIITEVTVRIRPIPELDVVHAIFFANWEQAQTAARTIAQANLPLGMLRL
HHHHHCCCCCEEEEEEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEE
STPTETMTNLALAGHERVIGLLEGFLKLRGVGSEKCLLLVGFIGSQAQVKLSRQAVLSLM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
RRHGGVHIGQSFGKAWQAGRFRAPYLRNRLWELGYGVDTVETATTWENVTPLLNRLEHSL
HHHCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
RHGLAAEHEQVHVFTHLSHFYPTGSSIYTTYAFRLGNDAQATLARWHALKTAASQAIVAA
HHCCCCCCCEEEEEEHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCEEEEC
GGTISHQHGVGLDHRPYLEAEKGRLGIGALQQLGQHFDPQGLLNPAKLYEDGQ
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MRRWNGWGDESKEYPVKAGILGLLKQLIGAGTAPSDVRLAEIVAQVPASRLPHHELISTD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHCCCHHHHCCC
PELRIRHARGQSFADLVATRSGELGQIPDGVAFPQSSQAVRELIDWASDNNVSLIPYGGG
CCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCC
TSVAGHINPVAGERPILTVSLAKLNRLMEINPTARLARFGAGIKGPDLEAQLRALGFTLG
CCCCCCCCCCCCCCCEEEEEHHHHHHHEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH
HFPQSFELSTLGGWIATRSSGQQSLGFGRIEQLWAGGRVETPRGSLELAPFPASAAGPDL
CCCCCCEEHHHCCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCHHH
REMLLGSEGRYGIITEVTVRIRPIPELDVVHAIFFANWEQAQTAARTIAQANLPLGMLRL
HHHHHCCCCCEEEEEEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEE
STPTETMTNLALAGHERVIGLLEGFLKLRGVGSEKCLLLVGFIGSQAQVKLSRQAVLSLM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
RRHGGVHIGQSFGKAWQAGRFRAPYLRNRLWELGYGVDTVETATTWENVTPLLNRLEHSL
HHHCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
RHGLAAEHEQVHVFTHLSHFYPTGSSIYTTYAFRLGNDAQATLARWHALKTAASQAIVAA
HHCCCCCCCEEEEEEHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCEEEEC
GGTISHQHGVGLDHRPYLEAEKGRLGIGALQQLGQHFDPQGLLNPAKLYEDGQ
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]