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The map label for this gene is ymfH [H]

Identifier: 15926862

GI number: 15926862

Start: 1275085

End: 1276371

Strand: Direct

Name: ymfH [H]

Synonym: SA1122

Alternate gene names: 15926862

Gene position: 1275085-1276371 (Clockwise)

Preceding gene: 15926861

Following gene: 15926863

Centisome position: 45.3

GC content: 31.0

Gene sequence:

>1287_bases
ATGAAAGAGCGTTATTATGAATTAATAGACGAAAGAGTATTCGAACAAGAATTAGAAAATGGTTTACGATTATTTATTAT
CCCCAAACCAGGTTTTCAAAAGACATTTGTCACTTACACTACACAATTTGGTTCATTAGATAATCAATTCAAACCCCTTG
GACAAGACCAATTTGTTACTGTACCTGATGGAGTTGCTCACTTTTTAGAACATAAATTATTTGAAAAAGAAGAAGAAGAC
TTATTTACTGCGTTTGCTGAAGATAATGCACAAGCAAATGCGTTTACAAGCTTTGATCGTACAAGCTACTTGTTCAGTGC
AACTGATAATATTGAAAACAACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATA
AAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAACAACCTGGATATAAATTAATGTTTAATACATTGCGT
GCAATGTATCAACGACATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTT
GTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATTTGTTGTTGGTGATGTGAATCCAGAAGAAATAT
GTCGAATAGTAAAACAACACGAGGATGCTCGTAATAAAGTTAACCAACCCAAAATCGAACGAGGACTTGTTGATGAACCG
GAGGATGTTAAAGAAGCATTTGTTACTGAATCTATGAAAATTCAATCACCAAGACTAATGCTTGGTTTTAAAAATAAACC
ATTACAAGAAGCGCCTCAAAAATATGTACAACGTGATTTAGAAATGTCATTATTCTTTGAGTTAATTTTTGGGGAAGAAA
CAGATTTTTATCAGAATTTATTAAACGAAGGACTTATCGATGATACATTTGGTTATCAATTTGTACTAGAGCCGACGTAT
AGTTTTTCAATCGTGACAAGCGCTACTGAAGAACCAGATAAATTAAAAAAATTATTATTAGATGAGTTGCGTGATAAAAA
AGGCAATTTCCAAGATGCAGAAGCATTTGAACTTTTGAAAAAGCAATTTATAGGTGAATTCATATCAAGTTTAAACTCAC
CTGAATATATTGCTAATCAATATACTAAATTGTATTTTGAAGGTGTTAGCGTGTTTGACATGTTAGACATTGTTGAAAAT
ATCACGTTAGATAGTATTAACGAAACGTCATCGTTATATTTAAATTTAGATCAGCAAGTCGATAGTCGTTTGGAGATTAA
AAAGTAA

Upstream 100 bases:

>100_bases
TAAATGATATACAGAAGGTAAGTCGCGAAGATATTGTTTCTGTTGCTGAAAAAGCATTTTTAGATACAATCTATGTGTTG
ACAAAAGGAGGGGATAAATA

Downstream 100 bases:

>100_bases
TGAAAGCATTAGTATTAGGTGGTTCTGGTTCAATTGGTTCTGAGATAGTCAAACAATTATTAACTGATGGATTTGAAGTT
TATGTGCAATATTATCGTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MKERYYELIDERVFEQELENGLRLFIIPKPGFQKTFVTYTTQFGSLDNQFKPLGQDQFVTVPDGVAHFLEHKLFEKEEED
LFTAFAEDNAQANAFTSFDRTSYLFSATDNIENNIKRLLTMVETPYFTKETVDKEKGIIAEEIKMYQEQPGYKLMFNTLR
AMYQRHPIRVDIAGSVESIYDITKDDLYLCYETFYHPSNMVLFVVGDVNPEEICRIVKQHEDARNKVNQPKIERGLVDEP
EDVKEAFVTESMKIQSPRLMLGFKNKPLQEAPQKYVQRDLEMSLFFELIFGEETDFYQNLLNEGLIDDTFGYQFVLEPTY
SFSIVTSATEEPDKLKKLLLDELRDKKGNFQDAEAFELLKKQFIGEFISSLNSPEYIANQYTKLYFEGVSVFDMLDIVEN
ITLDSINETSSLYLNLDQQVDSRLEIKK

Sequences:

>Translated_428_residues
MKERYYELIDERVFEQELENGLRLFIIPKPGFQKTFVTYTTQFGSLDNQFKPLGQDQFVTVPDGVAHFLEHKLFEKEEED
LFTAFAEDNAQANAFTSFDRTSYLFSATDNIENNIKRLLTMVETPYFTKETVDKEKGIIAEEIKMYQEQPGYKLMFNTLR
AMYQRHPIRVDIAGSVESIYDITKDDLYLCYETFYHPSNMVLFVVGDVNPEEICRIVKQHEDARNKVNQPKIERGLVDEP
EDVKEAFVTESMKIQSPRLMLGFKNKPLQEAPQKYVQRDLEMSLFFELIFGEETDFYQNLLNEGLIDDTFGYQFVLEPTY
SFSIVTSATEEPDKLKKLLLDELRDKKGNFQDAEAFELLKKQFIGEFISSLNSPEYIANQYTKLYFEGVSVFDMLDIVEN
ITLDSINETSSLYLNLDQQVDSRLEIKK
>Mature_428_residues
MKERYYELIDERVFEQELENGLRLFIIPKPGFQKTFVTYTTQFGSLDNQFKPLGQDQFVTVPDGVAHFLEHKLFEKEEED
LFTAFAEDNAQANAFTSFDRTSYLFSATDNIENNIKRLLTMVETPYFTKETVDKEKGIIAEEIKMYQEQPGYKLMFNTLR
AMYQRHPIRVDIAGSVESIYDITKDDLYLCYETFYHPSNMVLFVVGDVNPEEICRIVKQHEDARNKVNQPKIERGLVDEP
EDVKEAFVTESMKIQSPRLMLGFKNKPLQEAPQKYVQRDLEMSLFFELIFGEETDFYQNLLNEGLIDDTFGYQFVLEPTY
SFSIVTSATEEPDKLKKLLLDELRDKKGNFQDAEAFELLKKQFIGEFISSLNSPEYIANQYTKLYFEGVSVFDMLDIVEN
ITLDSINETSSLYLNLDQQVDSRLEIKK

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1787770, Length=260, Percent_Identity=27.6923076923077, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 49995; Mature: 49995

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERYYELIDERVFEQELENGLRLFIIPKPGFQKTFVTYTTQFGSLDNQFKPLGQDQFVT
CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEHHCCCCCCCCCCCCCCEEE
VPDGVAHFLEHKLFEKEEEDLFTAFAEDNAQANAFTSFDRTSYLFSATDNIENNIKRLLT
CCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEECCCCHHEEEECCCHHHHHHHHHHH
MVETPYFTKETVDKEKGIIAEEIKMYQEQPGYKLMFNTLRAMYQRHPIRVDIAGSVESIY
HHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHH
DITKDDLYLCYETFYHPSNMVLFVVGDVNPEEICRIVKQHEDARNKVNQPKIERGLVDEP
HCCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC
EDVKEAFVTESMKIQSPRLMLGFKNKPLQEAPQKYVQRDLEMSLFFELIFGEETDFYQNL
HHHHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LNEGLIDDTFGYQFVLEPTYSFSIVTSATEEPDKLKKLLLDELRDKKGNFQDAEAFELLK
HHCCCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
KQFIGEFISSLNSPEYIANQYTKLYFEGVSVFDMLDIVENITLDSINETSSLYLNLDQQV
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHH
DSRLEIKK
CCCCCCCC
>Mature Secondary Structure
MKERYYELIDERVFEQELENGLRLFIIPKPGFQKTFVTYTTQFGSLDNQFKPLGQDQFVT
CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEHHCCCCCCCCCCCCCCEEE
VPDGVAHFLEHKLFEKEEEDLFTAFAEDNAQANAFTSFDRTSYLFSATDNIENNIKRLLT
CCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEECCCCHHEEEECCCHHHHHHHHHHH
MVETPYFTKETVDKEKGIIAEEIKMYQEQPGYKLMFNTLRAMYQRHPIRVDIAGSVESIY
HHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHH
DITKDDLYLCYETFYHPSNMVLFVVGDVNPEEICRIVKQHEDARNKVNQPKIERGLVDEP
HCCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC
EDVKEAFVTESMKIQSPRLMLGFKNKPLQEAPQKYVQRDLEMSLFFELIFGEETDFYQNL
HHHHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LNEGLIDDTFGYQFVLEPTYSFSIVTSATEEPDKLKKLLLDELRDKKGNFQDAEAFELLK
HHCCCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
KQFIGEFISSLNSPEYIANQYTKLYFEGVSVFDMLDIVENITLDSINETSSLYLNLDQQV
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHH
DSRLEIKK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]