Click here to switch to the map view.

The map label for this gene is ymfF [H]

Identifier: 15926861

GI number: 15926861

Start: 1273820

End: 1275085

Strand: Direct

Name: ymfF [H]

Synonym: SA1121

Alternate gene names: 15926861

Gene position: 1273820-1275085 (Clockwise)

Preceding gene: 15926860

Following gene: 15926862

Centisome position: 45.25

GC content: 29.7

Gene sequence:

>1266_bases
TTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAA
ATTTATGGCACCTTTAGAATATGACACAATTACAGCTAGATCATTATTAAGCAAATTATTAGTTCGAGCAACTAAGAAAT
GGCCAACCGATAAGTCGTTTAATAATCACTTAGCCGATTTATATGGTGCGTATGTGAATAGTACAATTTCAAAATTCAAA
GATCAGCATGTCATTACATTTTCATTAGAAATTGTTAATGAACGTTATTTAAGAAACGGTGAATCATTATTTAATCAAGG
ATTAGATTTATTACAAGAAATCATTTGGAATCCATTAATTGAAAATAAAGCATTCAATGATAATTTTGTTAACCAAGAGA
AAACATTATTAGCCAAAAAAATAGAAGCAATGGTAGATAATAAAGCACAATATTCGTTTTTAAAATTACTCGACCATATG
TTTGAAAATGAAGCATATAAATACTTATCTACAGGACAACTAGAACAAATCCCACATATTACTGCTGAAACACTATATCA
TACATATCAATCAATGATTAATAATGATCAATGTTCTGTTTATGTTGTCGGCAATGTAGAACCTGAAAGTGTTGAGAAAC
AAATACGTGAAAAATTTGCACTTAAACCATTCGATAAACATCAATTCCAACATTCTACTCATCATTTACACGATGAAGAA
GTTGATTATATTGTTGAATATGATGACGTGGATCAAGCTAAATTAAATATGGGATACCGTTTTCCAACACAATATGGACA
AAGTGGATATGCTGCGTTTGTTGTATTTAACATGATGTTTGGAGGAGATCCTTCATCTGTTTTATTTAATGAAGTGCGAG
AAAAGCAAAGTTTAGCGTACTCTATACATTCACAAATTGATGGCAAAAATGGCTATTTATTTGTTTTGAGTGGGGTTTCA
AGTGATAAGTACGAAACTGCAAAAGACACTATTATAAGTGAATTTGAAAAAATAAAAGCAGGAGATTTCACTGAAGAAAA
ATTAGAGTTAGCTAAAAAAGTAATCATTTCTCATCGATATGAATCTGAAGATCGTCCGAAAAGTATTATAGAGATTATGC
ATAACCAAATATTATTAGAGCAACCACAAAGCAAAGAAACATTTATAAATGATATACAGAAGGTAAGTCGCGAAGATATT
GTTTCTGTTGCTGAAAAAGCATTTTTAGATACAATCTATGTGTTGACAAAAGGAGGGGATAAATAA

Upstream 100 bases:

>100_bases
ACCTATTTTGTATTCATTAAATTATATGAAAAATAGCTTAGTTCAATTTAAAATCACTAGAAAAATATAGATGTAAGAAG
ATATAGAGGAGGCTATATAT

Downstream 100 bases:

>100_bases
TGAAAGAGCGTTATTATGAATTAATAGACGAAAGAGTATTCGAACAAGAATTAGAAAATGGTTTACGATTATTTATTATC
CCCAAACCAGGTTTTCAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MSRQSQPNIHIKVSPTTKFKTTTIVFKFMAPLEYDTITARSLLSKLLVRATKKWPTDKSFNNHLADLYGAYVNSTISKFK
DQHVITFSLEIVNERYLRNGESLFNQGLDLLQEIIWNPLIENKAFNDNFVNQEKTLLAKKIEAMVDNKAQYSFLKLLDHM
FENEAYKYLSTGQLEQIPHITAETLYHTYQSMINNDQCSVYVVGNVEPESVEKQIREKFALKPFDKHQFQHSTHHLHDEE
VDYIVEYDDVDQAKLNMGYRFPTQYGQSGYAAFVVFNMMFGGDPSSVLFNEVREKQSLAYSIHSQIDGKNGYLFVLSGVS
SDKYETAKDTIISEFEKIKAGDFTEEKLELAKKVIISHRYESEDRPKSIIEIMHNQILLEQPQSKETFINDIQKVSREDI
VSVAEKAFLDTIYVLTKGGDK

Sequences:

>Translated_421_residues
MSRQSQPNIHIKVSPTTKFKTTTIVFKFMAPLEYDTITARSLLSKLLVRATKKWPTDKSFNNHLADLYGAYVNSTISKFK
DQHVITFSLEIVNERYLRNGESLFNQGLDLLQEIIWNPLIENKAFNDNFVNQEKTLLAKKIEAMVDNKAQYSFLKLLDHM
FENEAYKYLSTGQLEQIPHITAETLYHTYQSMINNDQCSVYVVGNVEPESVEKQIREKFALKPFDKHQFQHSTHHLHDEE
VDYIVEYDDVDQAKLNMGYRFPTQYGQSGYAAFVVFNMMFGGDPSSVLFNEVREKQSLAYSIHSQIDGKNGYLFVLSGVS
SDKYETAKDTIISEFEKIKAGDFTEEKLELAKKVIISHRYESEDRPKSIIEIMHNQILLEQPQSKETFINDIQKVSREDI
VSVAEKAFLDTIYVLTKGGDK
>Mature_420_residues
SRQSQPNIHIKVSPTTKFKTTTIVFKFMAPLEYDTITARSLLSKLLVRATKKWPTDKSFNNHLADLYGAYVNSTISKFKD
QHVITFSLEIVNERYLRNGESLFNQGLDLLQEIIWNPLIENKAFNDNFVNQEKTLLAKKIEAMVDNKAQYSFLKLLDHMF
ENEAYKYLSTGQLEQIPHITAETLYHTYQSMINNDQCSVYVVGNVEPESVEKQIREKFALKPFDKHQFQHSTHHLHDEEV
DYIVEYDDVDQAKLNMGYRFPTQYGQSGYAAFVVFNMMFGGDPSSVLFNEVREKQSLAYSIHSQIDGKNGYLFVLSGVSS
DKYETAKDTIISEFEKIKAGDFTEEKLELAKKVIISHRYESEDRPKSIIEIMHNQILLEQPQSKETFINDIQKVSREDIV
SVAEKAFLDTIYVLTKGGDK

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR007863 [H]

Pfam domain/function: PF05193 Peptidase_M16_C [H]

EC number: NA

Molecular weight: Translated: 48619; Mature: 48487

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRQSQPNIHIKVSPTTKFKTTTIVFKFMAPLEYDTITARSLLSKLLVRATKKWPTDKSF
CCCCCCCCEEEEECCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
NNHLADLYGAYVNSTISKFKDQHVITFSLEIVNERYLRNGESLFNQGLDLLQEIIWNPLI
HHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHH
ENKAFNDNFVNQEKTLLAKKIEAMVDNKAQYSFLKLLDHMFENEAYKYLSTGQLEQIPHI
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCH
TAETLYHTYQSMINNDQCSVYVVGNVEPESVEKQIREKFALKPFDKHQFQHSTHHLHDEE
HHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
VDYIVEYDDVDQAKLNMGYRFPTQYGQSGYAAFVVFNMMFGGDPSSVLFNEVREKQSLAY
CCEEEECCCCCHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SIHSQIDGKNGYLFVLSGVSSDKYETAKDTIISEFEKIKAGDFTEEKLELAKKVIISHRY
HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
ESEDRPKSIIEIMHNQILLEQPQSKETFINDIQKVSREDIVSVAEKAFLDTIYVLTKGGD
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
K
C
>Mature Secondary Structure 
SRQSQPNIHIKVSPTTKFKTTTIVFKFMAPLEYDTITARSLLSKLLVRATKKWPTDKSF
CCCCCCCEEEEECCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
NNHLADLYGAYVNSTISKFKDQHVITFSLEIVNERYLRNGESLFNQGLDLLQEIIWNPLI
HHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHH
ENKAFNDNFVNQEKTLLAKKIEAMVDNKAQYSFLKLLDHMFENEAYKYLSTGQLEQIPHI
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCH
TAETLYHTYQSMINNDQCSVYVVGNVEPESVEKQIREKFALKPFDKHQFQHSTHHLHDEE
HHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
VDYIVEYDDVDQAKLNMGYRFPTQYGQSGYAAFVVFNMMFGGDPSSVLFNEVREKQSLAY
CCEEEECCCCCHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SIHSQIDGKNGYLFVLSGVSSDKYETAKDTIISEFEKIKAGDFTEEKLELAKKVIISHRY
HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
ESEDRPKSIIEIMHNQILLEQPQSKETFINDIQKVSREDIVSVAEKAFLDTIYVLTKGGD
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]