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The map label for this gene is 15926858

Identifier: 15926858

GI number: 15926858

Start: 1268775

End: 1270448

Strand: Direct

Name: 15926858

Synonym: SA1118

Alternate gene names: NA

Gene position: 1268775-1270448 (Clockwise)

Preceding gene: 15926857

Following gene: 15926859

Centisome position: 45.07

GC content: 33.69

Gene sequence:

>1674_bases
TTGAGTTTAATAAAGAAAAAGAATAAAGATATTCGCATTATACCATTAGGCGGTGTTGGCGAAATTGCTAAAAATATGTA
TATCGTTGAAGTAGACGATGAAATGTTTATGTTAGATGCTGGACTTATGTTTCCAGAAGACGAAATGCTAGGTATTGATA
TTGTTATACCAGACATTTCATACGTACTTGAAAATAAAGATAAATTGAAGGGTATATTCCTTACACACGGACATGAGCAC
GCGATTGGTGCAGTGAGTTATGTTTTAGAACAATTAGATGCACCAGTATATGGATCTAAATTGACAATAGCGTTAATTAA
AGAAAATATGAAAGCCCGTAATATTGATAAAAAAGTTCGCTACTACACAGTTAACAATGATTCAATTATGAGATTCAAAA
ACGTGAATATTAGTTTCTTTAATACGACACACAGTATTCCTGATAGTTTAGGTGTTTGTATTCACACTTCATATGGTGCC
ATTGTGTATACAGGTGAATTTAAGTTTGACCAAAGTTTACATGGACATTATGCACCAGATATTAAACGTATGGCAGAGAT
TGGTGAAGAAGGCGTATTTGTCTTAATCAGTGATTCTACTGAGGCAGAGAAACCTGGATATAATACTCCGGAAAATGTAA
TTGAACATCATATGTATGATGCTTTTGCAAAAGTGCGAGGTCGCTTGATTGTTTCATGTTATGCTTCGAACTTTATACGT
ATTCAGCAAGTTTTAAATATTGCTAGCAAGCTAAATCGTAAAGTGTCATTTTTAGGAAGATCACTTGAAAGTTCATTTAA
TATTGCTCGTAAAATGGGGTATTTCGACATTCCTAAAGATTTGCTAATTCCTATAACAGAAGTTGATAATTATCCTAAAA
ATGAAGTGATAATTATAGCTACTGGTATGCAAGGAGAACCTGTAGAAGCCTTAAGTCAAATGGCGCAACATAAGCATAAA
ATTATGAATATCGAAGAAGGCGATTCTGTATTTTTAGCAATTACGGCTTCTGCTAATATGGAAGTTATCATTGCGAATAC
ATTAAATGAGCTTGTACGTGCTGGCGCACATATTATTCCAAATAACAAGAAGATTCATGCTTCAAGTCATGGTTGCATGG
AAGAATTAAAAATGATGATTAATATTATGAAACCTGAATACTTTATTCCTGTACAAGGTGAATTTAAAATGCAGATAGCA
CATGCGAAGCTAGCAGCTGAAGCAGGTGTTGCACCGGAAAAGATTTTCCTTGTGGAAAAAGGAGATGTCATTAATTACAA
CGGTAAAGATATGATATTAAATGAAAAGGTAAATTCGGGAAATATTTTAATAGATGGTATTGGTATTGGGGATGTAGGAA
ATATCGTGTTGAGAGACCGTCATCTTTTAGCAGAAGATGGTATCTTTATTGCTGTAGTAACGTTAGATCCTAAAAATAGA
CGTATAGCTGCGGGTCCTGAAATTCAATCTCGTGGGTTTGTATATGTACGTGAAAGTGAAGACTTATTACGTGAAGCAGA
AGAGAAAGTACGTGAAATAGTAGAAGCTGGTTTACAAGAAAAACGCATAGAATGGTCTGAAATTAAGCAAAATATGCGTG
ATCAAATTAGTAAACTATTATTCGAAAGTACAAAACGTCGTCCTATGATTATTCCAGTAATTTCTGAAATTTAA

Upstream 100 bases:

>100_bases
CTGTATGTATAGTGATTAATAGTGTACATCAAGTGTTTTTTAACTTATAATGAATAGTGAGTTTATATATGGACGGGTAA
CAAATTTAGGAGGTAAGATT

Downstream 100 bases:

>100_bases
TCAAAAAGTCATTAACATAAAAGAGGTCAGAACAAGTCACCGAAATATAATGGTTGTCATGGACAATTTACTTATATTTT
ATGATGGTCAATTGAAAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J2

Number of amino acids: Translated: 557; Mature: 556

Protein sequence:

>557_residues
MSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEH
AIGAVSYVLEQLDAPVYGSKLTIALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGA
IVYTGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIR
IQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHK
IMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIA
HAKLAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNR
RIAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRIEWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI

Sequences:

>Translated_557_residues
MSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEH
AIGAVSYVLEQLDAPVYGSKLTIALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGA
IVYTGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIR
IQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHK
IMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIA
HAKLAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNR
RIAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRIEWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI
>Mature_556_residues
SLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHA
IGAVSYVLEQLDAPVYGSKLTIALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAI
VYTGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRI
QQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKI
MNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAH
AKLAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNRR
IAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRIEWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNJ2_STAA3 (Q2FHG3)

Other databases:

- EMBL:   CP000255
- RefSeq:   YP_493865.1
- ProteinModelPortal:   Q2FHG3
- SMR:   Q2FHG3
- STRING:   Q2FHG3
- EnsemblBacteria:   EBSTAT00000036949
- GeneID:   3913610
- GenomeReviews:   CP000255_GR
- KEGG:   saa:SAUSA300_1168
- eggNOG:   COG0595
- GeneTree:   EBGT00050000024729
- HOGENOM:   HBG497378
- ProtClustDB:   CLSK885243
- GO:   GO:0005737
- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- SMART:   SM00849
- TIGRFAMs:   TIGR00649

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL

EC number: NA

Molecular weight: Translated: 62605; Mature: 62473

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGIDIVIPDIS
CCCCCCCCCCEEEEEECCHHHHHCCEEEEEECCCEEEEECCCCCCCCCEEEEEEEECCHH
YVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTIALIKENMKARNIDKKVR
HHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHCCCCCEEE
YYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVYTGEFKFDQSLHGHYAPD
EEEECCCCEEEEEECEEEEEECCCCCCCCCCEEEEECCCEEEEEECEEECCCCCCCCCHH
IKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIR
HHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHCCHHH
IQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEHHCCCCCCCCEEEEE
TGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHIIP
ECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEHHHHHHHHHCCCEECC
NNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGVAPEKIFLVEK
CCCEEECCCCHHHHHHHHHHHHCCCCEEEECCCCEEEEEEHHHHHHHCCCCCCEEEEEEC
GDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNR
CCEEEECCCEEEEECCCCCCCEEEEEECCCCCCCEEEECCEEEECCCEEEEEEEECCCCC
RIAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRIEWSEIKQNMRDQISKLL
EEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHH
FESTKRRPMIIPVISEI
HHHCCCCCEEEEECCCC
>Mature Secondary Structure 
SLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGIDIVIPDIS
CCCCCCCCCEEEEEECCHHHHHCCEEEEEECCCEEEEECCCCCCCCCEEEEEEEECCHH
YVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTIALIKENMKARNIDKKVR
HHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHCCCCCEEE
YYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVYTGEFKFDQSLHGHYAPD
EEEECCCCEEEEEECEEEEEECCCCCCCCCCEEEEECCCEEEEEECEEECCCCCCCCCHH
IKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIR
HHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHCCHHH
IQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEHHCCCCCCCCEEEEE
TGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHIIP
ECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEHHHHHHHHHCCCEECC
NNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGVAPEKIFLVEK
CCCEEECCCCHHHHHHHHHHHHCCCCEEEECCCCEEEEEEHHHHHHHCCCCCCEEEEEEC
GDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNR
CCEEEECCCEEEEECCCCCCCEEEEEECCCCCCCEEEECCEEEECCCEEEEEEEECCCCC
RIAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRIEWSEIKQNMRDQISKLL
EEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHH
FESTKRRPMIIPVISEI
HHHCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA