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The map label for this gene is rbfA

Identifier: 15926853

GI number: 15926853

Start: 1263268

End: 1263618

Strand: Direct

Name: rbfA

Synonym: SA1113

Alternate gene names: 15926853

Gene position: 1263268-1263618 (Clockwise)

Preceding gene: 15926852

Following gene: 15926854

Centisome position: 44.88

GC content: 30.48

Gene sequence:

>351_bases
ATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACAAATGAAGAAGGAATTAATGGATATCATCAACAATAAAGTCAAAGA
TCCTCGAGTTGGTTTTATTACAATTACAGATGTTGTTTTAACAAATGATTTATCGCAGGCTAAAGTATTTTTAACTGTAT
TAGGTAACGATAAAGAAGTAGAAAATACATTTAAAGCACTTGATAAAGCAAAAGGCTTCATTAAGTCTGAATTAGGTTCT
AGAATGCGATTACGTATTATGCCGGAATTAATGTATGAATATGATCAATCAATCGAATATGGTAATAAAATTGAACGAAT
GATTCAAGATTTACACAAACAAGATAGATAA

Upstream 100 bases:

>100_bases
AATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTA
AAGATAAAGAGGTGACAAGA

Downstream 100 bases:

>100_bases
TTTAGTGTTAGGTATCTGGAAAATGTTTGATAATTTCTTAATATCGGTATATTAACATTAAACAGTTAATACATAGATGT
GTAGAAATAGTTAACATTTT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQAKVFLTVLGNDKEVENTFKALDKAKGFIKSELGS
RMRLRIMPELMYEYDQSIEYGNKIERMIQDLHKQDR

Sequences:

>Translated_116_residues
MSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQAKVFLTVLGNDKEVENTFKALDKAKGFIKSELGS
RMRLRIMPELMYEYDQSIEYGNKIERMIQDLHKQDR
>Mature_115_residues
SSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQAKVFLTVLGNDKEVENTFKALDKAKGFIKSELGSR
MRLRIMPELMYEYDQSIEYGNKIERMIQDLHKQDR

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=115, Percent_Identity=42.6086956521739, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_STAA1 (A7X1Q2)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001441850.1
- ProteinModelPortal:   A7X1Q2
- SMR:   A7X1Q2
- STRING:   A7X1Q2
- EnsemblBacteria:   EBSTAT00000003797
- GeneID:   5561491
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1260
- eggNOG:   COG0858
- GeneTree:   EBGT00050000025529
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- BioCyc:   SAUR418127:SAHV_1260-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13515; Mature: 13384

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQAKVFLTVLGNDKEV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHCCHHHHHEEEEECCCCHHH
ENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIERMIQDLHKQDR
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSMRAERVGEQMKKELMDIINNKVKDPRVGFITITDVVLTNDLSQAKVFLTVLGNDKEV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHCCHHHHHEEEEECCCCHHH
ENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKIERMIQDLHKQDR
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA