Definition | Staphylococcus aureus subsp. aureus N315, complete genome. |
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Accession | NC_002745 |
Length | 2,814,816 |
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The map label for this gene is yabJ [H]
Identifier: 15926174
GI number: 15926174
Start: 525948
End: 526328
Strand: Direct
Name: yabJ [H]
Synonym: SA0455
Alternate gene names: 15926174
Gene position: 525948-526328 (Clockwise)
Preceding gene: 15926173
Following gene: 161376700
Centisome position: 18.68
GC content: 34.38
Gene sequence:
>381_bases ATGAAAATCATTAACACAACAAGATTACCGGAAGCACTTGGACCATATTCGCATGCAACAGTTGTGAATGGTATGGTTTA TACTTCTGGTCAGATTCCATTGAATGTTGATGGGAAAATCGTAAGCGCTGATGTTCAAGCACAGACAAAACAAGTTTTAG AAAATTTAAAGGTTGTTTTGGAAGAAGCAGGATCTGATTTGAATTCTGTTGCGAAAGCGACCATTTTCATTAAAGATATG AATGATTTCCAAAAAATAAATGAAGTGTATGGTCAATATTTTAATGAACACAAGCCAGCGCGTAGTTGTGTAGAGGTTGC GCGTTTGCCAAAAGATGTGAAAGTAGAAATTGAATTAGTAAGTAAAATTAAGGAATTATAA
Upstream 100 bases:
>100_bases TCCTTAGTGAAATTATCTGATGTAGATGAATATAATCAAGAGTTTAACGTAGAACCTGGCAACAGTTTATCTAAGTTTTC ATAAAAGGAGTTTTAGTATT
Downstream 100 bases:
>100_bases TTTTCGATTAATATGTTTAATCAAGCTTCTAAATAAAACAGAGAGATATATACTATAGGGGGGCTCACTACATGAAAGTG ACAGATGTAAGACTTAGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 126; Mature: 126
Protein sequence:
>126_residues MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNVDGKIVSADVQAQTKQVLENLKVVLEEAGSDLNSVAKATIFIKDM NDFQKINEVYGQYFNEHKPARSCVEVARLPKDVKVEIELVSKIKEL
Sequences:
>Translated_126_residues MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNVDGKIVSADVQAQTKQVLENLKVVLEEAGSDLNSVAKATIFIKDM NDFQKINEVYGQYFNEHKPARSCVEVARLPKDVKVEIELVSKIKEL >Mature_126_residues MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNVDGKIVSADVQAQTKQVLENLKVVLEEAGSDLNSVAKATIFIKDM NDFQKINEVYGQYFNEHKPARSCVEVARLPKDVKVEIELVSKIKEL
Specific function: Anaerobic degradation of L-threonine to propionate. [C]
COG id: COG0251
COG function: function code J; Putative translation initiation inhibitor, yjgF family
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RutC family [H]
Homologues:
Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=42.9752066115703, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI87082213, Length=123, Percent_Identity=51.219512195122, Blast_Score=130, Evalue=3e-32, Organism=Escherichia coli, GI87082396, Length=123, Percent_Identity=49.5934959349593, Blast_Score=128, Evalue=1e-31, Organism=Escherichia coli, GI1787245, Length=114, Percent_Identity=35.0877192982456, Blast_Score=84, Evalue=2e-18, Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=32.4561403508772, Blast_Score=62, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=41.6, Blast_Score=100, Evalue=2e-22, Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=41.6, Blast_Score=100, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=41.6, Blast_Score=100, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=41.5254237288136, Blast_Score=108, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=47, Blast_Score=104, Evalue=3e-24, Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=43.801652892562, Blast_Score=104, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013813 - InterPro: IPR006175 - InterPro: IPR006056 - InterPro: IPR019897 [H]
Pfam domain/function: PF01042 Ribonuc_L-PSP [H]
EC number: NA
Molecular weight: Translated: 13973; Mature: 13973
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS01094 UPF0076
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNVDGKIVSADVQAQTKQVLENLKVVL CCCCCCCCCCHHHCCCCHHHHHCCEEEECCCCEECCCCEEEEHHHHHHHHHHHHHHHHHH EEAGSDLNSVAKATIFIKDMNDFQKINEVYGQYFNEHKPARSCVEVARLPKDVKVEIELV HHHCCCHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHH SKIKEL HHHHCC >Mature Secondary Structure MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNVDGKIVSADVQAQTKQVLENLKVVL CCCCCCCCCCHHHCCCCHHHHHCCEEEECCCCEECCCCEEEEHHHHHHHHHHHHHHHHHH EEAGSDLNSVAKATIFIKDMNDFQKINEVYGQYFNEHKPARSCVEVARLPKDVKVEIELV HHHCCCHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHH SKIKEL HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]