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The map label for this gene is xylR

Identifier: 15925748

GI number: 15925748

Start: 49752

End: 50882

Strand: Direct

Name: xylR

Synonym: SA0041

Alternate gene names: 15925748

Gene position: 49752-50882 (Clockwise)

Preceding gene: 15925747

Following gene: 15925752

Centisome position: 1.77

GC content: 29.0

Gene sequence:

>1131_bases
ATAAATGATAATGAAAAAAGAGTGCTAAGGGAAATTTATAACCATCATAATATTTCGCGTACTCAAATATCTAAAAATCT
TGAGATTAATAAGGCAACGATTTCTAGTATTTTGAATAAGTTAAAGTATAAATCTCTTGTTAATGAGGTTGGTGAGGGTG
ATAGCACGAAGAGTGGTGGTAGAAAACCTATTCTTCTGAAGGTTAATCATCTTTATGGTTATTTTATTTCTTTGGATTTA
ACTTATAGTTCTGTTGAAGTGATGTACAATTATTTTGATGGTAATGTCATTAAGCATGAATCTTATGATTTACCTGATGA
AAAGGTTAGTAGTATATTAAGCATAATAAAAAAACATATTGATATTCAGGAGAAACTTGATACTTATAACGGACTATTAG
GTGTGTCTGTTTCTATACATGGAGTTGTGGATAATGAGCAGCATGTGACATATTTACCATTCCATGAAACTGAAGGAATT
TCAATTGCTAAGAAAATAAAAGAAATTACTAATGTTCCAGTCGTAGTTGAAAATGAAGCGAATCTTTCAGCGTTATATGA
ACGTAATTTTAATCATAATTTATCCTACAATAATCTTATTGCTTTAAGTATACATAAAGGTATTGGTGCTGGGCTTATTA
TTAATAATCAATTGTATCGTGGTGCAAATGGGGAAGCGGGTGAAATTGGAAAAACACTTGTCTCAAAAGTTAGCGATAAT
GTGGAGATCTTTCATAAGATTGAAGATATTTTTTCACAAGAAGCTTTACTGCATAATTTAAGTAATCAACTAAATGAGAA
GATGACGCTTAGCAAATTAATTCAATTTTATAATGAAAAAAATCCAGTCGTAGTTGAAGAAATGGAACAATTTATAAATA
AAATTGCTGTTTTAATACATAATTTAAACACCCAGTTTAATCCGAATGCAATTTACATTAACTGTCCATTGTTCAATGAA
ATGCCTGAAATATTAGAAGCAATTAAGAACCAGTTCAAACAATATTCACGTAACGAAATTCAAATAAAGTTAACATCTAA
TGTCAAATTTGCAACTTTGCTAGGTGGTACATTAGCAATTATCCAAAAAGTACTACAGATTAATGATATTTACTTAGATA
TAAAAGCATAA

Upstream 100 bases:

>100_bases
TAATTTAATTTATGTTAAAATAGTTGGTATAAAAATACATGATAAACTATAAACTAAATTCAAAATAACTTATGGGGTAG
GCAATTATGGAAAATAAAAT

Downstream 100 bases:

>100_bases
AAAACTAATTCAAATGAATAATCAAAGTTCGTAATTGTCTTTATAAAAAAATCCCTCAATCCGAATTGAATTTTCGGATT
GAGGGATTTTTATAGTTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MNDNEKRVLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLKVNHLYGYFISLDL
TYSSVEVMYNYFDGNVIKHESYDLPDEKVSSILSIIKKHIDIQEKLDTYNGLLGVSVSIHGVVDNEQHVTYLPFHETEGI
SIAKKIKEITNVPVVVENEANLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDN
VEIFHKIEDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNE
MPEILEAIKNQFKQYSRNEIQIKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA

Sequences:

>Translated_376_residues
MNDNEKRVLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLKVNHLYGYFISLDL
TYSSVEVMYNYFDGNVIKHESYDLPDEKVSSILSIIKKHIDIQEKLDTYNGLLGVSVSIHGVVDNEQHVTYLPFHETEGI
SIAKKIKEITNVPVVVENEANLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDN
VEIFHKIEDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNE
MPEILEAIKNQFKQYSRNEIQIKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA
>Mature_376_residues
MNDNEKRVLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLKVNHLYGYFISLDL
TYSSVEVMYNYFDGNVIKHESYDLPDEKVSSILSIIKKHIDIQEKLDTYNGLLGVSVSIHGVVDNEQHVTYLPFHETEGI
SIAKKIKEITNVPVVVENEANLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDN
VEIFHKIEDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNE
MPEILEAIKNQFKQYSRNEIQIKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=330, Percent_Identity=25.7575757575758, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI87082127, Length=394, Percent_Identity=23.0964467005076, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787878, Length=380, Percent_Identity=22.3684210526316, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR002831
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK; PF01978 TrmB [H]

EC number: NA

Molecular weight: Translated: 42672; Mature: 42672

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS01125 ROK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDNEKRVLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGG
CCCCHHHHHHHHHHCCCCCHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RKPILLKVNHLYGYFISLDLTYSSVEVMYNYFDGNVIKHESYDLPDEKVSSILSIIKKHI
CCEEEEEEECEEEEEEEEEEEHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC
DIQEKLDTYNGLLGVSVSIHGVVDNEQHVTYLPFHETEGISIAKKIKEITNVPVVVENEA
CHHHHHHHHCCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCC
NLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDN
CHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEECCCEECCCCCCCHHHHHHHHHHHCCC
VEIFHKIEDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHH
NLNTQFNPNAIYINCPLFNEMPEILEAIKNQFKQYSRNEIQIKLTSNVKFATLLGGTLAI
HCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEHHHHHHHHH
IQKVLQINDIYLDIKA
HHHHHHHCEEEEEEEC
>Mature Secondary Structure
MNDNEKRVLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGG
CCCCHHHHHHHHHHCCCCCHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RKPILLKVNHLYGYFISLDLTYSSVEVMYNYFDGNVIKHESYDLPDEKVSSILSIIKKHI
CCEEEEEEECEEEEEEEEEEEHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC
DIQEKLDTYNGLLGVSVSIHGVVDNEQHVTYLPFHETEGISIAKKIKEITNVPVVVENEA
CHHHHHHHHCCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCC
NLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDN
CHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEECCCEECCCCCCCHHHHHHHHHHHCCC
VEIFHKIEDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHH
NLNTQFNPNAIYINCPLFNEMPEILEAIKNQFKQYSRNEIQIKLTSNVKFATLLGGTLAI
HCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEHHHHHHHHH
IQKVLQINDIYLDIKA
HHHHHHHCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1714034 [H]