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The map label for this gene is rtcB [C]

Identifier: 15921558

GI number: 15921558

Start: 1290995

End: 1292446

Strand: Direct

Name: rtcB [C]

Synonym: ST1292

Alternate gene names: 15921558

Gene position: 1290995-1292446 (Clockwise)

Preceding gene: 15921555

Following gene: 15921559

Centisome position: 47.91

GC content: 36.98

Gene sequence:

>1452_bases
ATGTCACAAGTTACGATAAAACGAGTAAATACTTATGAATGGCGTATTGATAAAGGAACTCAAGAGTGTATGAAGGTACC
AGTTACAGTATTTGCAGATGATGTACTTATAGAAAAAATGAAACAAGATCTTACTTTGAAACAAGCAATGAATGTTGCAT
GTTTGCAAGGTGTTCAAGAGTCTGTTTATGTCTTACCAGATGGGCATCAGGGTTATGGATTTCCTATTGGGGGGATAGCT
GCAACAGCAATTGATGAAGAAGGGGTTGTGAGTCCAGGAGGTATAGGATATGATATTAACTGTGGAGTTAGACTTCTTAG
AACTAATTTGGATTATAAAGATGTAAAAGATAAGCTTAGAGATCTTGTTGAAGAGATTTATAGAAATGTACCTAGCGGAG
TAGGAAGTGAAGGAAAAGTAAAATTGTCTTTCCAGCAGTTAGATAATGTACTGGCTGAAGGTGTGAGATGGGCTGTGGAT
AACGGATATGGCTGGGAAAAAGATATGGAACATATAGAACAACATGGTAGTTGGGATTTAGCTGATCCTTCAAAGGTTAG
TCCTATAGCTAAGCAAAGAGGACATACTCAGTTAGGTACTTTAGGCGCGGGAAATCACTTTCTTGAGATTCAAGTGGTTG
ATAAAATATATGATCCAGAGGTTGCTAAAGCGTTAGGAATTACCCATGAAGGACAAGTAACTGTAATGGTTCATACTGGT
TCTAGGGGATTAGGTCATCAAGTAGCTAGTGATTATTTACAAATTATGGAAAGAGCTATGAAGAAATATAATATAACAGT
ACCAGATAGAGAATTAGCAGCAATTCCATTTAATACAAGGGAAGCTCAAGACTATATTCATGCGATGGCATCAGCAGCAA
ATTTTGCTTGGACTAATAGGCAGATGATTTCACATTGGGTTAGAGAAAGCTTTGGAAAAGTTTTTCATGTAGACCCAGAA
AAATTAGATTTAAGCATAATATATGATGTTGCTCACAATATTGCTAAAATAGAAGAATATGATATTAATGGAAAGAGAAA
GAAAGTTTTGGTTCATAGAAAAGGGGCTACAAGAGCTTTTCCACCTGGTAGCCCAGAAATTCCAGTAGATTATAGGAATA
TTGGTCAAGTAGTTTTAATTCCCGGTAGTATGGGTACTGCAAGTTATGTTATGGTTGGAATTCCAGAAGGTAGAAGGACA
TGGTATACTGCCCCTCATGGTGCTGGTAGATGGATGTCAAGAGAGGCCGCTGTACGTAATTATCCAGTAAATTCAGTTGT
ACAGAATCTGGAGCAAAAAGGAATAGTTATAAGAGCTGCTACCAGAAGAGTAGTTTCTGAAGAAGCTCCTGGAGCTTATA
AAGATGTAGATAGAGTAGCTAAAGTAGCTCATGAGGTAAAAATAGCTAAACTAGTTGTAAGATTAAGACCAATAGGTGTT
ACTAAAGGATGA

Upstream 100 bases:

>100_bases
ATATAATCAGAGCTCAGCCAGTGAACATCATTTCTCAGCGTCCGCTATTGTCATCATCAAAACAGATTTATTAACAAATT
ACTATATATTTTCATTTGGA

Downstream 100 bases:

>100_bases
AAAGAGAAGAATTACTTGTCGAGGAAATAAAAGATCTAACATTAGAAGAGCTTAAGGGGTATGCAGATTTTTATAAGATA
TTAGATAAAGTTTATGGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 482

Protein sequence:

>483_residues
MSQVTIKRVNTYEWRIDKGTQECMKVPVTVFADDVLIEKMKQDLTLKQAMNVACLQGVQESVYVLPDGHQGYGFPIGGIA
ATAIDEEGVVSPGGIGYDINCGVRLLRTNLDYKDVKDKLRDLVEEIYRNVPSGVGSEGKVKLSFQQLDNVLAEGVRWAVD
NGYGWEKDMEHIEQHGSWDLADPSKVSPIAKQRGHTQLGTLGAGNHFLEIQVVDKIYDPEVAKALGITHEGQVTVMVHTG
SRGLGHQVASDYLQIMERAMKKYNITVPDRELAAIPFNTREAQDYIHAMASAANFAWTNRQMISHWVRESFGKVFHVDPE
KLDLSIIYDVAHNIAKIEEYDINGKRKKVLVHRKGATRAFPPGSPEIPVDYRNIGQVVLIPGSMGTASYVMVGIPEGRRT
WYTAPHGAGRWMSREAAVRNYPVNSVVQNLEQKGIVIRAATRRVVSEEAPGAYKDVDRVAKVAHEVKIAKLVVRLRPIGV
TKG

Sequences:

>Translated_483_residues
MSQVTIKRVNTYEWRIDKGTQECMKVPVTVFADDVLIEKMKQDLTLKQAMNVACLQGVQESVYVLPDGHQGYGFPIGGIA
ATAIDEEGVVSPGGIGYDINCGVRLLRTNLDYKDVKDKLRDLVEEIYRNVPSGVGSEGKVKLSFQQLDNVLAEGVRWAVD
NGYGWEKDMEHIEQHGSWDLADPSKVSPIAKQRGHTQLGTLGAGNHFLEIQVVDKIYDPEVAKALGITHEGQVTVMVHTG
SRGLGHQVASDYLQIMERAMKKYNITVPDRELAAIPFNTREAQDYIHAMASAANFAWTNRQMISHWVRESFGKVFHVDPE
KLDLSIIYDVAHNIAKIEEYDINGKRKKVLVHRKGATRAFPPGSPEIPVDYRNIGQVVLIPGSMGTASYVMVGIPEGRRT
WYTAPHGAGRWMSREAAVRNYPVNSVVQNLEQKGIVIRAATRRVVSEEAPGAYKDVDRVAKVAHEVKIAKLVVRLRPIGV
TKG
>Mature_482_residues
SQVTIKRVNTYEWRIDKGTQECMKVPVTVFADDVLIEKMKQDLTLKQAMNVACLQGVQESVYVLPDGHQGYGFPIGGIAA
TAIDEEGVVSPGGIGYDINCGVRLLRTNLDYKDVKDKLRDLVEEIYRNVPSGVGSEGKVKLSFQQLDNVLAEGVRWAVDN
GYGWEKDMEHIEQHGSWDLADPSKVSPIAKQRGHTQLGTLGAGNHFLEIQVVDKIYDPEVAKALGITHEGQVTVMVHTGS
RGLGHQVASDYLQIMERAMKKYNITVPDRELAAIPFNTREAQDYIHAMASAANFAWTNRQMISHWVRESFGKVFHVDPEK
LDLSIIYDVAHNIAKIEEYDINGKRKKVLVHRKGATRAFPPGSPEIPVDYRNIGQVVLIPGSMGTASYVMVGIPEGRRTW
YTAPHGAGRWMSREAAVRNYPVNSVVQNLEQKGIVIRAATRRVVSEEAPGAYKDVDRVAKVAHEVKIAKLVVRLRPIGVT
KG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=494, Percent_Identity=48.1781376518219, Blast_Score=466, Evalue=1e-131,
Organism=Escherichia coli, GI2367224, Length=442, Percent_Identity=27.6018099547511, Blast_Score=147, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17506665, Length=494, Percent_Identity=46.5587044534413, Blast_Score=434, Evalue=1e-122,
Organism=Drosophila melanogaster, GI24585217, Length=494, Percent_Identity=47.9757085020243, Blast_Score=441, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 53644; Mature: 53513

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVTIKRVNTYEWRIDKGTQECMKVPVTVFADDVLIEKMKQDLTLKQAMNVACLQGVQE
CCCEEEEECCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SVYVLPDGHQGYGFPIGGIAATAIDEEGVVSPGGIGYDINCGVRLLRTNLDYKDVKDKLR
CEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHH
DLVEEIYRNVPSGVGSEGKVKLSFQQLDNVLAEGVRWAVDNGYGWEKDMEHIEQHGSWDL
HHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCCCC
ADPSKVSPIAKQRGHTQLGTLGAGNHFLEIQVVDKIYDPEVAKALGITHEGQVTVMVHTG
CCCCCCCHHHHHCCCCEECCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECC
SRGLGHQVASDYLQIMERAMKKYNITVPDRELAAIPFNTREAQDYIHAMASAANFAWTNR
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCH
QMISHWVRESFGKVFHVDPEKLDLSIIYDVAHNIAKIEEYDINGKRKKVLVHRKGATRAF
HHHHHHHHHHCCCEEECCHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
PPGSPEIPVDYRNIGQVVLIPGSMGTASYVMVGIPEGRRTWYTAPHGAGRWMSREAAVRN
CCCCCCCCCCHHCCCEEEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHHHHHC
YPVNSVVQNLEQKGIVIRAATRRVVSEEAPGAYKDVDRVAKVAHEVKIAKLVVRLRPIGV
CCHHHHHHHHHHCCEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TKG
CCC
>Mature Secondary Structure 
SQVTIKRVNTYEWRIDKGTQECMKVPVTVFADDVLIEKMKQDLTLKQAMNVACLQGVQE
CCEEEEECCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SVYVLPDGHQGYGFPIGGIAATAIDEEGVVSPGGIGYDINCGVRLLRTNLDYKDVKDKLR
CEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHH
DLVEEIYRNVPSGVGSEGKVKLSFQQLDNVLAEGVRWAVDNGYGWEKDMEHIEQHGSWDL
HHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCCCC
ADPSKVSPIAKQRGHTQLGTLGAGNHFLEIQVVDKIYDPEVAKALGITHEGQVTVMVHTG
CCCCCCCHHHHHCCCCEECCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECC
SRGLGHQVASDYLQIMERAMKKYNITVPDRELAAIPFNTREAQDYIHAMASAANFAWTNR
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCH
QMISHWVRESFGKVFHVDPEKLDLSIIYDVAHNIAKIEEYDINGKRKKVLVHRKGATRAF
HHHHHHHHHHCCCEEECCHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
PPGSPEIPVDYRNIGQVVLIPGSMGTASYVMVGIPEGRRTWYTAPHGAGRWMSREAAVRN
CCCCCCCCCCHHCCCEEEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHHHHHC
YPVNSVVQNLEQKGIVIRAATRRVVSEEAPGAYKDVDRVAKVAHEVKIAKLVVRLRPIGV
CCHHHHHHHHHHCCEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TKG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]