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The map label for this gene is truD

Identifier: 15920388

GI number: 15920388

Start: 229029

End: 230120

Strand: Reverse

Name: truD

Synonym: ST0207

Alternate gene names: 15920388

Gene position: 230120-229029 (Counterclockwise)

Preceding gene: 15920389

Following gene: 15920387

Centisome position: 8.54

GC content: 28.57

Gene sequence:

>1092_bases
ATGCTCGGGATGGAGAAGTATTTTATAAATGAAGACTGGAGTCCACTGAAGGTTTTTATCAATAGACCTGATGGTTTTAG
GGTTATTGAGGAGATCTCTTATAAACCTGCTACGGAATGGAAAGGTTCCATACAAGGCAAATATGCTGTATATTTACTTA
GAAAGCGGGGAATAGACCATTTTACTGTGATAAGTGAAATATCAAAAATATTACATAGCAAGATACATTATATAGGAATT
AAGGATACAAATGCTATTACAGAACAAATAGTATATACAACTAATGTAAAAAATATTATTGAGAAGTATGAAAATGACAA
GTTTCTTTTAACCTTCTTAGGTTATAGCAATTCTAAATTTAATCATACTGGGAACATATTTGAGATAGAGATAGAAACTG
ATGATATTAAAGAGTTTGAAAAAAGAGTAAATAAACTAAGGAGCATAAAATATTTACCAGCTTATATAGGCTATCAACGA
TTTGGGACAAAAAGACCTATAACTCACATTATAGGTAAAATGTTGGTGTTGAGAGAATGGCAAAATGCTATTGATTTTTT
GGTAGGATATCCTTTTGAAAGCGAAAGCGAACTTGTAAAAAAAGCTAGATATGCTTATATGAAAGGCGATCTTAAAGAAG
CACTAGAATTATTCCCTAAAAGATTTAGAGATGAAAGAATAGCTATTAAACTGCTTCTTAGGAATGAGAATTATTTTAAC
ATATTAAGAAATTTACAAACTCCACTTATATTTTACATAGAAGCTTACCAATCATATTTATTTAATAAGTATCTATCAAG
GATAATGGATCCTACTAAGATAGATGAGAATTTAGTAATAAAAATTCCAACATCATATGATAGTTGTGATAGTATTTGTA
GAGAAATATTTAGAGAAGAAGGACTACTAAATATTAATTTTAAGATTAAGGAACTAAAACTAAATGTTAAGGATCTTGTA
AGAAAAGCATATACTCTAATTAGAAATTTAACCATAAAAGATAAAAAAATTACATTTGCTTTAGATCGTGGAATTTATGC
AACTATTGTTATAAGAGAGATTGCGAGAACTGATCCAAGACTTTTTACTTAG

Upstream 100 bases:

>100_bases
AATGAAGTTTAGATATTCAGTAAAAACTTTAAGTCAGCGAATATTTTATCACTAATTTAGGCGAAGTTAACTGGTAACTA
CACCGCATCCAATAGATATA

Downstream 100 bases:

>100_bases
GGTGTTAGTCTTTTCTTATCTCTAGGGAAGGGAACTATTTCCTTAACGCTCTGTATTCCCGTTAACATTACCATTAGCCT
TGCTAGTCCCATTCCAAATC

Product: hypothetical protein

Products: NA

Alternate protein names: tRNA pseudouridylate synthase D; tRNA-uridine isomerase D

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MLGMEKYFINEDWSPLKVFINRPDGFRVIEEISYKPATEWKGSIQGKYAVYLLRKRGIDHFTVISEISKILHSKIHYIGI
KDTNAITEQIVYTTNVKNIIEKYENDKFLLTFLGYSNSKFNHTGNIFEIEIETDDIKEFEKRVNKLRSIKYLPAYIGYQR
FGTKRPITHIIGKMLVLREWQNAIDFLVGYPFESESELVKKARYAYMKGDLKEALELFPKRFRDERIAIKLLLRNENYFN
ILRNLQTPLIFYIEAYQSYLFNKYLSRIMDPTKIDENLVIKIPTSYDSCDSICREIFREEGLLNINFKIKELKLNVKDLV
RKAYTLIRNLTIKDKKITFALDRGIYATIVIREIARTDPRLFT

Sequences:

>Translated_363_residues
MLGMEKYFINEDWSPLKVFINRPDGFRVIEEISYKPATEWKGSIQGKYAVYLLRKRGIDHFTVISEISKILHSKIHYIGI
KDTNAITEQIVYTTNVKNIIEKYENDKFLLTFLGYSNSKFNHTGNIFEIEIETDDIKEFEKRVNKLRSIKYLPAYIGYQR
FGTKRPITHIIGKMLVLREWQNAIDFLVGYPFESESELVKKARYAYMKGDLKEALELFPKRFRDERIAIKLLLRNENYFN
ILRNLQTPLIFYIEAYQSYLFNKYLSRIMDPTKIDENLVIKIPTSYDSCDSICREIFREEGLLNINFKIKELKLNVKDLV
RKAYTLIRNLTIKDKKITFALDRGIYATIVIREIARTDPRLFT
>Mature_363_residues
MLGMEKYFINEDWSPLKVFINRPDGFRVIEEISYKPATEWKGSIQGKYAVYLLRKRGIDHFTVISEISKILHSKIHYIGI
KDTNAITEQIVYTTNVKNIIEKYENDKFLLTFLGYSNSKFNHTGNIFEIEIETDDIKEFEKRVNKLRSIKYLPAYIGYQR
FGTKRPITHIIGKMLVLREWQNAIDFLVGYPFESESELVKKARYAYMKGDLKEALELFPKRFRDERIAIKLLLRNENYFN
ILRNLQTPLIFYIEAYQSYLFNKYLSRIMDPTKIDENLVIKIPTSYDSCDSICREIFREEGLLNINFKIKELKLNVKDLV
RKAYTLIRNLTIKDKKITFALDRGIYATIVIREIARTDPRLFT

Specific function: Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs

COG id: COG0585

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRUD domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRUD_SULTO (Q976I1)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376057.1
- ProteinModelPortal:   Q976I1
- SMR:   Q976I1
- GeneID:   1458096
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST0207
- NMPDR:   fig|273063.1.peg.225
- HOGENOM:   HBG553495
- OMA:   AYIGYQR
- ProtClustDB:   CLSK802596
- BioCyc:   STOK273063:ST0207-MONOMER
- HAMAP:   MF_01082
- InterPro:   IPR020103
- InterPro:   IPR001656
- InterPro:   IPR011760
- PANTHER:   PTHR13326

Pfam domain/function: PF01142 TruD; SSF55120 PsdUridine_synth_cat_dom

EC number: NA

Molecular weight: Translated: 43038; Mature: 43038

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS50984 TRUD; PS01268 UPF0024

Important sites: ACT_SITE 82-82

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGMEKYFINEDWSPLKVFINRPDGFRVIEEISYKPATEWKGSIQGKYAVYLLRKRGIDH
CCCCCHHHCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCHHEEEEEHHCCCCH
FTVISEISKILHSKIHYIGIKDTNAITEQIVYTTNVKNIIEKYENDKFLLTFLGYSNSKF
HHHHHHHHHHHHHHEEEEECCCCHHHHHHHEEECCHHHHHHHHCCCCEEEEEECCCCCCC
NHTGNIFEIEIETDDIKEFEKRVNKLRSIKYLPAYIGYQRFGTKRPITHIIGKMLVLREW
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
QNAIDFLVGYPFESESELVKKARYAYMKGDLKEALELFPKRFRDERIAIKLLLRNENYFN
HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEECCHHHH
ILRNLQTPLIFYIEAYQSYLFNKYLSRIMDPTKIDENLVIKIPTSYDSCDSICREIFREE
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC
GLLNINFKIKELKLNVKDLVRKAYTLIRNLTIKDKKITFALDRGIYATIVIREIARTDPR
CEEEEEEEEEEEECCHHHHHHHHHHHHHCCEEECCEEEEEECCCCHHHHHHHHHHCCCCC
LFT
CCC
>Mature Secondary Structure
MLGMEKYFINEDWSPLKVFINRPDGFRVIEEISYKPATEWKGSIQGKYAVYLLRKRGIDH
CCCCCHHHCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCHHEEEEEHHCCCCH
FTVISEISKILHSKIHYIGIKDTNAITEQIVYTTNVKNIIEKYENDKFLLTFLGYSNSKF
HHHHHHHHHHHHHHEEEEECCCCHHHHHHHEEECCHHHHHHHHCCCCEEEEEECCCCCCC
NHTGNIFEIEIETDDIKEFEKRVNKLRSIKYLPAYIGYQRFGTKRPITHIIGKMLVLREW
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
QNAIDFLVGYPFESESELVKKARYAYMKGDLKEALELFPKRFRDERIAIKLLLRNENYFN
HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEECCHHHH
ILRNLQTPLIFYIEAYQSYLFNKYLSRIMDPTKIDENLVIKIPTSYDSCDSICREIFREE
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC
GLLNINFKIKELKLNVKDLVRKAYTLIRNLTIKDKKITFALDRGIYATIVIREIARTDPR
CEEEEEEEEEEEECCHHHHHHHHHHHHHCCEEECCEEEEEECCCCHHHHHHHHHHCCCCC
LFT
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11572479