Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 15920218

GI number: 15920218

Start: 57914

End: 58957

Strand: Reverse

Name: ydcM [C]

Synonym: ST0041

Alternate gene names: 15920218

Gene position: 58957-57914 (Counterclockwise)

Preceding gene: 15920219

Following gene: 15920217

Centisome position: 2.19

GC content: 44.25

Gene sequence:

>1044_bases
ATGAGGGAAAATTACCAAAGTGGTTTAAACCAAGACCTCCAAGGGTATTGGAAAGATAAAAGTGGAAAATATAAACTAAT
CCTAATCATTAGGAACGATCGTTATGAGGTGGATGAGAACAAGAGGATCATCTATTTGAAGGACTTCAAACTCTCTCTGA
GGTTTAAGGGGAAACTCAAGTGGCACGGGAAACAAGGTAGATTAGAAATAATTTACAACGAAGCTAAGAGGAGTTGGTAT
GCTCATATTCCAGTGGAGGTTGAAAGTGAAACGAAAGTTGAGGGCAACCTGAGGGCTTCTGTTGATTTAGGAATCATCAA
TTTAGCAACAGTTTACGTAGAAGATGGTAGTTGGTACCTTTTCAAGGGTGGTAGTGTTCTTTCACAGTATGAGTATTATA
GCAAGAAGATACGAATCGTTCAGAAGACCTTAGCGAGGCATAAGCAGAATAGGAGCAAGAAGCTGAAACTCCTCTACGAG
AATAGGAGTAGGTTCCTCAAACACGCTTTAAACAGTATGGTTAGGAAAGTAGTGGAGCTGTTGAAGGACAAACGGGTAAG
CGAGGTTGTTATAGGTTATCCTAAAGAGATTAATAGGAACCACGGTAATAAACTCACTGTAAACTTCTGGAACTACAGGT
ACGTTATTAAGCGTTTTGAGGAGATTGGGGAAGAACTAGGAATTAGGGTTGTTAAAGTGGATGAATCTTATACTTCTAAG
ACGTGCTCCCTATGCGGGGAAGCCCACGAAAGTGGGCGTGTTAAACGCGGCCTATTTAAGTGTCCCCGCATAGGGAAAGT
GATAAACGCAGACCTGAATGGAGCGATAAATATCCTACATATCCCCGAGTCCCTAGGATCTGGGAGTGGAGGGCAACTCC
CAGTGAGGGATAGGGGTAACGGACTGAAGATCCAGCCCGTGGTCTACCGCTGGACGAACGGAGCGGGGTGGGTGCTTTAC
GCACCCACTAGCTATGAAGTTGTGAGGATGAAGGTGGTAAACCACAAACCTATGAACCGCCCTAAGGGAACCCTCGCCCT
TTAG

Upstream 100 bases:

>100_bases
TACGAGAAGTACAAACACGTGTTAAAGGTTAACGTTCAACAAGTTGCTAGAAAGAACGCTGAGGACTGGAGAAGCTTCTT
CTCCCTAATCGAAGAGAAGA

Downstream 100 bases:

>100_bases
GGCGAGGAGGAGGTCAGTATGCAATATGGAATCCCAAATGGATAATAGAGGACTTCATTAAATTCGAATTACCACCAGAT
ATAGAAAAGGAATACGGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: IS Element ISTsi3 OrfB Probably Transposase; Transposase ISC; Neutral Protease; Transposase And Inactivated Derivatives; IS Element ISDka2 OrfB; IS Element ISTsi2 OrfB Probably Transposase; Transport-Associated OB Domain Protein; C-Terminal Of Inactivated Transposase; ISChy8 Transposase; Transposase Family

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MRENYQSGLNQDLQGYWKDKSGKYKLILIIRNDRYEVDENKRIIYLKDFKLSLRFKGKLKWHGKQGRLEIIYNEAKRSWY
AHIPVEVESETKVEGNLRASVDLGIINLATVYVEDGSWYLFKGGSVLSQYEYYSKKIRIVQKTLARHKQNRSKKLKLLYE
NRSRFLKHALNSMVRKVVELLKDKRVSEVVIGYPKEINRNHGNKLTVNFWNYRYVIKRFEEIGEELGIRVVKVDESYTSK
TCSLCGEAHESGRVKRGLFKCPRIGKVINADLNGAINILHIPESLGSGSGGQLPVRDRGNGLKIQPVVYRWTNGAGWVLY
APTSYEVVRMKVVNHKPMNRPKGTLAL

Sequences:

>Translated_347_residues
MRENYQSGLNQDLQGYWKDKSGKYKLILIIRNDRYEVDENKRIIYLKDFKLSLRFKGKLKWHGKQGRLEIIYNEAKRSWY
AHIPVEVESETKVEGNLRASVDLGIINLATVYVEDGSWYLFKGGSVLSQYEYYSKKIRIVQKTLARHKQNRSKKLKLLYE
NRSRFLKHALNSMVRKVVELLKDKRVSEVVIGYPKEINRNHGNKLTVNFWNYRYVIKRFEEIGEELGIRVVKVDESYTSK
TCSLCGEAHESGRVKRGLFKCPRIGKVINADLNGAINILHIPESLGSGSGGQLPVRDRGNGLKIQPVVYRWTNGAGWVLY
APTSYEVVRMKVVNHKPMNRPKGTLAL
>Mature_347_residues
MRENYQSGLNQDLQGYWKDKSGKYKLILIIRNDRYEVDENKRIIYLKDFKLSLRFKGKLKWHGKQGRLEIIYNEAKRSWY
AHIPVEVESETKVEGNLRASVDLGIINLATVYVEDGSWYLFKGGSVLSQYEYYSKKIRIVQKTLARHKQNRSKKLKLLYE
NRSRFLKHALNSMVRKVVELLKDKRVSEVVIGYPKEINRNHGNKLTVNFWNYRYVIKRFEEIGEELGIRVVKVDESYTSK
TCSLCGEAHESGRVKRGLFKCPRIGKVINADLNGAINILHIPESLGSGSGGQLPVRDRGNGLKIQPVVYRWTNGAGWVLY
APTSYEVVRMKVVNHKPMNRPKGTLAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI288549314, Length=224, Percent_Identity=28.125, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40166; Mature: 40166

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRENYQSGLNQDLQGYWKDKSGKYKLILIIRNDRYEVDENKRIIYLKDFKLSLRFKGKLK
CCCCHHHCCCCCHHHHCCCCCCCEEEEEEEECCCEEECCCCEEEEEEEEEEEEEEEEEEE
WHGKQGRLEIIYNEAKRSWYAHIPVEVESETKVEGNLRASVDLGIINLATVYVEDGSWYL
EECCCCCEEEEEECCCCCEEEEEEEEECCCCEECCCEEEEEEEEEEEEEEEEEECCCEEE
FKGGSVLSQYEYYSKKIRIVQKTLARHKQNRSKKLKLLYENRSRFLKHALNSMVRKVVEL
EECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHH
LKDKRVSEVVIGYPKEINRNHGNKLTVNFWNYRYVIKRFEEIGEELGIRVVKVDESYTSK
HHCCCCCEEEECCCHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHCEEEEEECCCCCHH
TCSLCGEAHESGRVKRGLFKCPRIGKVINADLNGAINILHIPESLGSGSGGQLPVRDRGN
HHHHHHHHHHCCCHHHHHHCCCCCCCEEECCCCCCEEEEECCHHHCCCCCCEEEECCCCC
GLKIQPVVYRWTNGAGWVLYAPTSYEVVRMKVVNHKPMNRPKGTLAL
CEEEEEEEEEEECCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MRENYQSGLNQDLQGYWKDKSGKYKLILIIRNDRYEVDENKRIIYLKDFKLSLRFKGKLK
CCCCHHHCCCCCHHHHCCCCCCCEEEEEEEECCCEEECCCCEEEEEEEEEEEEEEEEEEE
WHGKQGRLEIIYNEAKRSWYAHIPVEVESETKVEGNLRASVDLGIINLATVYVEDGSWYL
EECCCCCEEEEEECCCCCEEEEEEEEECCCCEECCCEEEEEEEEEEEEEEEEEECCCEEE
FKGGSVLSQYEYYSKKIRIVQKTLARHKQNRSKKLKLLYENRSRFLKHALNSMVRKVVEL
EECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHH
LKDKRVSEVVIGYPKEINRNHGNKLTVNFWNYRYVIKRFEEIGEELGIRVVKVDESYTSK
HHCCCCCEEEECCCHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHCEEEEEECCCCCHH
TCSLCGEAHESGRVKRGLFKCPRIGKVINADLNGAINILHIPESLGSGSGGQLPVRDRGN
HHHHHHHHHHCCCHHHHHHCCCCCCCEEECCCCCCEEEEECCHHHCCCCCCEEEECCCCC
GLKIQPVVYRWTNGAGWVLYAPTSYEVVRMKVVNHKPMNRPKGTLAL
CEEEEEEEEEEECCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA