Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159185443
Identifier: 159185443
GI number: 159185443
Start: 2401667
End: 2402704
Strand: Direct
Name: 159185443
Synonym: Atu8178
Alternate gene names: NA
Gene position: 2401667-2402704 (Clockwise)
Preceding gene: 159185211
Following gene: 15889700
Centisome position: 84.52
GC content: 65.51
Gene sequence:
>1038_bases ATGGAACAGACGGCAAGACTTCGGCTTCCCTACATCCTGCCCTCGCAGGCCCAGAAACACGTCACCCACAATGAGGCCCT GCAAAGGCTCGATGCGATCGTGCAGCTCGTCATCAGGGCCACAGTCACCGCACCGCCCGAAAATGCGGCGGAAGGAGACT GCTTCCTCCTCTCGGCCGATGCCACGGGCGACTGGGCCGGCAAGGGCGGCAGGCTCGCTTTCCGGCAGGATGGCGCATGG CTTTCGATCACGCCACAGTCCGGCTGGACGGCATGGTTTGTGACCGACGCCAGATACCGGGTGCTGCAGGACGGGAACTG GCGCGACTTGCCGCTGCCCGCCACCGGCCGGCTGGAAAGGCTGGGTATCGGCACAGATGCCGATGCGAACAACCGCATGG CGCTCGCCTCCCCCGCAAGCCTCTTCACCCATACACAGGAAGACGGCAGCCACCGCCTGACGGTCAACAAGGCGGGCAAA GCCGATACCGCCTCGCTGCTGTTCCAGTCGGGCTGGAGCGGCCGGGCGGAAATGGGCCTTGCTGGCAGCGACGGCTTTTC CATCAAGACCAGCCGGGACGGCACATCCTGGCACACGGCACTTTTATGCAGCGGCGAGGGCCGGGTCTCGATACCCAACC GCCCGCTTGCCGTCGCCGGCCAGCCGGCGGGCACCACGAAACCCGCCAATGGCTCTGCCGCCGGTTTTTCCGTGCTCGTC ATCGCCGAGGGCGGTTTTGCGCTTGGTGATGCGGTGAGCGGCGGCGGGCGGGACCTCGTCATTCCCGCCAAGGGCATTTA TCTCGTCATGCTGTCACTGGCTGTCGTCGCCTCCTCCGGCCACCGGGTGACGCTCACCGTCAATGGCGCTGCGGCGAATT TCAGCGTCGCCGGCAATGCCTCGATTGCCGGCACCACGCAGTCGGCAACCGCGCTTCTTTCCCTCGATGCCGGTGACCGC CTGCGGCTGCAACATGAGGGAATGGTGGAATTGACCCAGGGAAGCGGGAAAACGTGCCTGTCCCTTGCGGCATTGTGA
Upstream 100 bases:
>100_bases AAGCTCCACAAAAATAATTCCTTCCCCCTTCATCCCCACCCCCCGCCACCGCATCACAATGCCCCGCGAACGAACACAAC CCCGCGGAAGGCACATCACG
Downstream 100 bases:
>100_bases GGAAAACAACCGATAAGCGAGAAAAATTGCGATTTTTGGAAAAATTTTTTCCCGGCAAAATAAGGCGACTCGAACAAATC AGGCGAAACCGTTCAAATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MEQTARLRLPYILPSQAQKHVTHNEALQRLDAIVQLVIRATVTAPPENAAEGDCFLLSADATGDWAGKGGRLAFRQDGAW LSITPQSGWTAWFVTDARYRVLQDGNWRDLPLPATGRLERLGIGTDADANNRMALASPASLFTHTQEDGSHRLTVNKAGK ADTASLLFQSGWSGRAEMGLAGSDGFSIKTSRDGTSWHTALLCSGEGRVSIPNRPLAVAGQPAGTTKPANGSAAGFSVLV IAEGGFALGDAVSGGGRDLVIPAKGIYLVMLSLAVVASSGHRVTLTVNGAAANFSVAGNASIAGTTQSATALLSLDAGDR LRLQHEGMVELTQGSGKTCLSLAAL
Sequences:
>Translated_345_residues MEQTARLRLPYILPSQAQKHVTHNEALQRLDAIVQLVIRATVTAPPENAAEGDCFLLSADATGDWAGKGGRLAFRQDGAW LSITPQSGWTAWFVTDARYRVLQDGNWRDLPLPATGRLERLGIGTDADANNRMALASPASLFTHTQEDGSHRLTVNKAGK ADTASLLFQSGWSGRAEMGLAGSDGFSIKTSRDGTSWHTALLCSGEGRVSIPNRPLAVAGQPAGTTKPANGSAAGFSVLV IAEGGFALGDAVSGGGRDLVIPAKGIYLVMLSLAVVASSGHRVTLTVNGAAANFSVAGNASIAGTTQSATALLSLDAGDR LRLQHEGMVELTQGSGKTCLSLAAL >Mature_345_residues MEQTARLRLPYILPSQAQKHVTHNEALQRLDAIVQLVIRATVTAPPENAAEGDCFLLSADATGDWAGKGGRLAFRQDGAW LSITPQSGWTAWFVTDARYRVLQDGNWRDLPLPATGRLERLGIGTDADANNRMALASPASLFTHTQEDGSHRLTVNKAGK ADTASLLFQSGWSGRAEMGLAGSDGFSIKTSRDGTSWHTALLCSGEGRVSIPNRPLAVAGQPAGTTKPANGSAAGFSVLV IAEGGFALGDAVSGGGRDLVIPAKGIYLVMLSLAVVASSGHRVTLTVNGAAANFSVAGNASIAGTTQSATALLSLDAGDR LRLQHEGMVELTQGSGKTCLSLAAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35827; Mature: 35827
Theoretical pI: Translated: 7.64; Mature: 7.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQTARLRLPYILPSQAQKHVTHNEALQRLDAIVQLVIRATVTAPPENAAEGDCFLLSAD CCCCCEEEECEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEECC ATGDWAGKGGRLAFRQDGAWLSITPQSGWTAWFVTDARYRVLQDGNWRDLPLPATGRLER CCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCEEE LGIGTDADANNRMALASPASLFTHTQEDGSHRLTVNKAGKADTASLLFQSGWSGRAEMGL EECCCCCCCCCEEEEECCHHHEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEE AGSDGFSIKTSRDGTSWHTALLCSGEGRVSIPNRPLAVAGQPAGTTKPANGSAAGFSVLV CCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEE IAEGGFALGDAVSGGGRDLVIPAKGIYLVMLSLAVVASSGHRVTLTVNGAAANFSVAGNA EECCCEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCC SIAGTTQSATALLSLDAGDRLRLQHEGMVELTQGSGKTCLSLAAL EEECCCCCCEEEEEECCCCEEEEECCCEEEEECCCCCEEEEEECC >Mature Secondary Structure MEQTARLRLPYILPSQAQKHVTHNEALQRLDAIVQLVIRATVTAPPENAAEGDCFLLSAD CCCCCEEEECEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEECC ATGDWAGKGGRLAFRQDGAWLSITPQSGWTAWFVTDARYRVLQDGNWRDLPLPATGRLER CCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCEEE LGIGTDADANNRMALASPASLFTHTQEDGSHRLTVNKAGKADTASLLFQSGWSGRAEMGL EECCCCCCCCCEEEEECCHHHEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEE AGSDGFSIKTSRDGTSWHTALLCSGEGRVSIPNRPLAVAGQPAGTTKPANGSAAGFSVLV CCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEE IAEGGFALGDAVSGGGRDLVIPAKGIYLVMLSLAVVASSGHRVTLTVNGAAANFSVAGNA EECCCEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCC SIAGTTQSATALLSLDAGDRLRLQHEGMVELTQGSGKTCLSLAAL EEECCCCCCEEEEEECCCCEEEEECCCEEEEECCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA