Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185425
Identifier: 159185425
GI number: 159185425
Start: 412452
End: 413651
Strand: Direct
Name: 159185425
Synonym: Atu8121
Alternate gene names: NA
Gene position: 412452-413651 (Clockwise)
Preceding gene: 159185423
Following gene: 15887767
Centisome position: 14.51
GC content: 61.5
Gene sequence:
>1200_bases ATGGCGCAGCGCCGCATATTTTTGCACAGCGCAATAGAACAAGGATCGGTCGTGAGCGGACTGGAAACGGCAATCAGAAA TGCTCTGGAAAAATCGGACAGATCGAACGCCGAAGTTCGTGCACGGATTTACCAATCTTCCCGTCAGGCCTTGGAAGCTG GCCTTCGCAAGCAGGGCATAGACGATCCGCAAGTCGTTGCCCAGCAGCGTCAGCGGCTCGAGAGCCTCATTCATCTCATT GAAAATGAAGAGCGCAACCGTCTCCTGGACAGGGTGGAGCAGCAATTGCGCCCGCCTGCGTCTGAAAGTCCGGTGGAACA TGATCACGGGGTTGATCCTGTTTCGCAGCCAGCCCATCACGACCATATGGCAGTCGAGCCGGAGCTGCGCGGGGAAACGC GCGATGTGCGGCCGGGTGCTGCTGCCATTGCTCCGGAGACGTCGAGCGCGGGGCAGCGCAACGGAAAGCCATCGAAGCGG AGCTCCAGCGCGGCCGATGCGTCACTTGCTTTCCGCCCGGAGGGCGCGGTTGGCCGCCGCAAGCGCCGCGGGCTGTTTGC CCGGCTTTTCATCTATGTGACGCTGCTGGCCTTTATCGGCTTCGGCGCCTGGTGGGTCTATTCTTCCGGCCTGCTGCTGT CGCCGGAACAGCGCGATACCAGCGTGCCCAATCCGCCCGCACAGGTGCAGGCGGAAGATTTCAACGGCACGGAGCCCGCG CCCAGCCTTTCTGCCGGCCGCGGCTTTTCCGATGACTGGGTCGAGGTCTTTAATGCGGAGCGCGGCAGCTCCGGTGTTTC GGCCGGCCCGCGCGCCAATGTTGAAAACGTTGCCACGCCCGCCGGCAAGGTAATACGGGTGACCTCGAAAAGTGTGGCGC AGGATGGCGCCGTCAGCGTCGAGGTTCCGGTGGAGGTAATGCGGGACATGGCGGGCAAGTCCTCGACCATATCGATCACG CTGCAATCCTCCAGTGATCGCCAGACACAGGTGTCCGTCTCCTGCGATTTCGCCACGCTGGGCGATTGTTCCCGCCACCG CTTCACCGCGACGGCCGAGCGTGCAGATATGCTGCTGAACACGACATTCGAGCGGTCTCTCGCTCCCAATGCGCCGGGCA AGATTTTCATCAACAGCGATATTGATGGCAGCGGCCGCCCGATCAATCTTTATTCGGTGCGCATTCTGCCGGGTCAATAA
Upstream 100 bases:
>100_bases TGTAACGCCACAATGGATCGATTTTCCTCAAGGCAATCCGGTCTTTATCATAAACGATGCTTGCGGAGGGGCGGCATAGC CGTTACCGAATCGTGAAGAC
Downstream 100 bases:
>100_bases GGGAAAGCACAAGCGCCTCGGATGGGGCGCTTGTGATCGTCTCCCGGTCTTATTTGAGAAAATCTGGTCCTGATCCCAAT ATCTTGTCGTCGATCTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; BirS-Like Protein Incolved In Biotin Regulatory Network
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MAQRRIFLHSAIEQGSVVSGLETAIRNALEKSDRSNAEVRARIYQSSRQALEAGLRKQGIDDPQVVAQQRQRLESLIHLI ENEERNRLLDRVEQQLRPPASESPVEHDHGVDPVSQPAHHDHMAVEPELRGETRDVRPGAAAIAPETSSAGQRNGKPSKR SSSAADASLAFRPEGAVGRRKRRGLFARLFIYVTLLAFIGFGAWWVYSSGLLLSPEQRDTSVPNPPAQVQAEDFNGTEPA PSLSAGRGFSDDWVEVFNAERGSSGVSAGPRANVENVATPAGKVIRVTSKSVAQDGAVSVEVPVEVMRDMAGKSSTISIT LQSSSDRQTQVSVSCDFATLGDCSRHRFTATAERADMLLNTTFERSLAPNAPGKIFINSDIDGSGRPINLYSVRILPGQ
Sequences:
>Translated_399_residues MAQRRIFLHSAIEQGSVVSGLETAIRNALEKSDRSNAEVRARIYQSSRQALEAGLRKQGIDDPQVVAQQRQRLESLIHLI ENEERNRLLDRVEQQLRPPASESPVEHDHGVDPVSQPAHHDHMAVEPELRGETRDVRPGAAAIAPETSSAGQRNGKPSKR SSSAADASLAFRPEGAVGRRKRRGLFARLFIYVTLLAFIGFGAWWVYSSGLLLSPEQRDTSVPNPPAQVQAEDFNGTEPA PSLSAGRGFSDDWVEVFNAERGSSGVSAGPRANVENVATPAGKVIRVTSKSVAQDGAVSVEVPVEVMRDMAGKSSTISIT LQSSSDRQTQVSVSCDFATLGDCSRHRFTATAERADMLLNTTFERSLAPNAPGKIFINSDIDGSGRPINLYSVRILPGQ >Mature_398_residues AQRRIFLHSAIEQGSVVSGLETAIRNALEKSDRSNAEVRARIYQSSRQALEAGLRKQGIDDPQVVAQQRQRLESLIHLIE NEERNRLLDRVEQQLRPPASESPVEHDHGVDPVSQPAHHDHMAVEPELRGETRDVRPGAAAIAPETSSAGQRNGKPSKRS SSAADASLAFRPEGAVGRRKRRGLFARLFIYVTLLAFIGFGAWWVYSSGLLLSPEQRDTSVPNPPAQVQAEDFNGTEPAP SLSAGRGFSDDWVEVFNAERGSSGVSAGPRANVENVATPAGKVIRVTSKSVAQDGAVSVEVPVEVMRDMAGKSSTISITL QSSSDRQTQVSVSCDFATLGDCSRHRFTATAERADMLLNTTFERSLAPNAPGKIFINSDIDGSGRPINLYSVRILPGQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43251; Mature: 43120
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQRRIFLHSAIEQGSVVSGLETAIRNALEKSDRSNAEVRARIYQSSRQALEAGLRKQGI CCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC DDPQVVAQQRQRLESLIHLIENEERNRLLDRVEQQLRPPASESPVEHDHGVDPVSQPAHH CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC DHMAVEPELRGETRDVRPGAAAIAPETSSAGQRNGKPSKRSSSAADASLAFRPEGAVGRR CCEEECHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHH KRRGLFARLFIYVTLLAFIGFGAWWVYSSGLLLSPEQRDTSVPNPPAQVQAEDFNGTEPA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCC PSLSAGRGFSDDWVEVFNAERGSSGVSAGPRANVENVATPAGKVIRVTSKSVAQDGAVSV CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECHHHHCCCCEEE EVPVEVMRDMAGKSSTISITLQSSSDRQTQVSVSCDFATLGDCSRHRFTATAERADMLLN EECHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEECCHHHCCCCCCCEEHHHHHHHHHHH TTFERSLAPNAPGKIFINSDIDGSGRPINLYSVRILPGQ HHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEEEECCC >Mature Secondary Structure AQRRIFLHSAIEQGSVVSGLETAIRNALEKSDRSNAEVRARIYQSSRQALEAGLRKQGI CCCEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC DDPQVVAQQRQRLESLIHLIENEERNRLLDRVEQQLRPPASESPVEHDHGVDPVSQPAHH CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC DHMAVEPELRGETRDVRPGAAAIAPETSSAGQRNGKPSKRSSSAADASLAFRPEGAVGRR CCEEECHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHH KRRGLFARLFIYVTLLAFIGFGAWWVYSSGLLLSPEQRDTSVPNPPAQVQAEDFNGTEPA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCC PSLSAGRGFSDDWVEVFNAERGSSGVSAGPRANVENVATPAGKVIRVTSKSVAQDGAVSV CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECHHHHCCCCEEE EVPVEVMRDMAGKSSTISITLQSSSDRQTQVSVSCDFATLGDCSRHRFTATAERADMLLN EECHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEECCHHHCCCCCCCEEHHHHHHHHHHH TTFERSLAPNAPGKIFINSDIDGSGRPINLYSVRILPGQ HHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA