Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159185421
Identifier: 159185421
GI number: 159185421
Start: 1734692
End: 1735216
Strand: Reverse
Name: 159185421
Synonym: Atu8091
Alternate gene names: NA
Gene position: 1735216-1734692 (Counterclockwise)
Preceding gene: 15889051
Following gene: 15889049
Centisome position: 61.07
GC content: 58.1
Gene sequence:
>525_bases ATGAATGACTATGTGGCCCTGCTGCACAGCATCGTGCTCGGCCCCGGCAAGCGGCTCATCATGGCCGATCTCAGGGCCCT GGCGGAAGAGCTGGGATTTGCAGAATGCAAGACACTTGTCGCGACCGGAAATCTGGTTTTTTGCGCTGAAGCGGCACCTG TTCGCGAGATTGAAGACAGGCTGGAGCGTGCCTTTGAGACCCGTTTCGGCAGACATGTCGATATTCTCGTTCGTTCTGGC AGAGATTGGCTGAAACTGGCGGCGGACAATCCGTTTCCGCATGGCAATCCGCCTGACGTCTGCGTTCGGGTCATGCGGGA GCCGCTTGACGAGAACGTTCTCGGATTATTCGATAAGTCCCGTCAGCGGGAAGAGGTTGCCGTGGTCGGCGGCGACCTGT GGATCGATTTTCGGGGCAAACCTAGCGAGAGCAGACTGCTGTCGGTCCTGACCACCAAAAGGCTCGGTATCGGCACGACC CGCAACGCCAATACGGTCAATGGTCTCGCGGAAATGCTTCGCTGA
Upstream 100 bases:
>100_bases GCTGCGGCCCTGGTGGCACCAGCGGGCTGGACCCGGTTCCGGAAGAACTCGATGGCAGCAAACGCTGGTGGACGCCGTGG CGTTACTGGAGCCGGCATCG
Downstream 100 bases:
>100_bases CCTGCCCTTCACCTTTGACTGGAATGGCAAAAGCCTTTATCAGCCTGCCTGTTCGCTTATCGCGGGCAGATCATTATTCC AACACCACCCGCATTCGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 174; Mature: 174
Protein sequence:
>174_residues MNDYVALLHSIVLGPGKRLIMADLRALAEELGFAECKTLVATGNLVFCAEAAPVREIEDRLERAFETRFGRHVDILVRSG RDWLKLAADNPFPHGNPPDVCVRVMREPLDENVLGLFDKSRQREEVAVVGGDLWIDFRGKPSESRLLSVLTTKRLGIGTT RNANTVNGLAEMLR
Sequences:
>Translated_174_residues MNDYVALLHSIVLGPGKRLIMADLRALAEELGFAECKTLVATGNLVFCAEAAPVREIEDRLERAFETRFGRHVDILVRSG RDWLKLAADNPFPHGNPPDVCVRVMREPLDENVLGLFDKSRQREEVAVVGGDLWIDFRGKPSESRLLSVLTTKRLGIGTT RNANTVNGLAEMLR >Mature_174_residues MNDYVALLHSIVLGPGKRLIMADLRALAEELGFAECKTLVATGNLVFCAEAAPVREIEDRLERAFETRFGRHVDILVRSG RDWLKLAADNPFPHGNPPDVCVRVMREPLDENVLGLFDKSRQREEVAVVGGDLWIDFRGKPSESRLLSVLTTKRLGIGTT RNANTVNGLAEMLR
Specific function: Unknown
COG id: COG3797
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19366; Mature: 19366
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDYVALLHSIVLGPGKRLIMADLRALAEELGFAECKTLVATGNLVFCAEAAPVREIEDR CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCHHHHHHH LERAFETRFGRHVDILVRSGRDWLKLAADNPFPHGNPPDVCVRVMREPLDENVLGLFDKS HHHHHHHHCCCEEEEEECCCCHHEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCC RQREEVAVVGGDLWIDFRGKPSESRLLSVLTTKRLGIGTTRNANTVNGLAEMLR CCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC >Mature Secondary Structure MNDYVALLHSIVLGPGKRLIMADLRALAEELGFAECKTLVATGNLVFCAEAAPVREIEDR CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCHHHHHHH LERAFETRFGRHVDILVRSGRDWLKLAADNPFPHGNPPDVCVRVMREPLDENVLGLFDKS HHHHHHHHCCCEEEEEECCCCHHEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCC RQREEVAVVGGDLWIDFRGKPSESRLLSVLTTKRLGIGTTRNANTVNGLAEMLR CCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA