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The map label for this gene is agpA [H]

Identifier: 159185279

GI number: 159185279

Start: 2563153

End: 2565054

Strand: Direct

Name: agpA [H]

Synonym: Atu2587

Alternate gene names: 159185279

Gene position: 2563153-2565054 (Clockwise)

Preceding gene: 15889843

Following gene: 159185280

Centisome position: 90.2

GC content: 59.41

Gene sequence:

>1902_bases
TTGATCACGCGCCGCACCACGCTCGCCTTGCTGGCCTCCGTCTTCCTGCCGGCCTATGCGCGCGCCGCCTATGTCGACCC
GGCCTATTTCAAGGACAAACGCGAAAAGGGCGAATTGCCCGACGTGGCCGAGCGCCTGCCGAAAAACCCGCGCGTCATCG
ACATGAAAGCGCTTGGCCGCGAACCGGGAAAACATGGCGGCTCGGTGCGCATGCTCATTGGCGGACAGCGTGACATCCGG
CTCATGCCGATCAGCAACTATGCCCGCCTTGTCGGTTATGACGAAAAATTCGAACTGCATCCGGACATCCTCGAAAGCTA
CGAGGTTCAGGAAGAGCGCATCTTCACCTTCAAGCTGCGCGAGGGCCACAAATGGTCCGATGGCAGCGACTTCACTTCCG
AGGATTTCCGGTATTTCTGGGAGGATGTCGCCCTCAACAAGGAAATTCACAAGGGCGGTCCACCGATCGAACTTCTGGTC
AACAATAATCCACCGCTGATCGAAGTCGTCGACCGGCTGACGGTGCGTTACACTTGGGAAGGCCCGAACCCGGATTTCCT
GGCAAAGCTCGCGGCGGCCTCGCCTGCGCGGCTGTTCCTTCCCGCCGCTTACATGAAGCAGTTCCACGTCAAATATCAGA
CCGCGGAAAATCTCGCCAAGCTTATCAAGAAGAACAAGGCGGATGACTGGAGCGGGCTGCATATCAAGATGTCACGGCAG
GTCCGGCCGGAGAACCCCGCTTTGCCGACTCTCGACGCATGGCGAAACACGACCTCGCCGCCGGCCGAGCAATTCGTGTT
CGAGCGCAACCCCTATTATCACCGCGTCGACGAAAACGGCCTGCAACTGCCTTATCTCGACCGTTTCCTGCTGAACGTCA
CCTCCTCCGATATCATCTCGGCCAAAACGGCATCGGGCGATAGCGACCTGCAATATTTCGGCCTCGATTTCGCCGATTAC
ACTTTCCTGAAGGATGCGGAAAAGCGTTTCCCCCTGAAGGTCAATCTCTACAAACGCTCTCAAGGCTCGCGCATCGCGCT
GCTGCCCAATCTCAATTGCGCCGATCCGGTCTGGCGCACCGCTTTCCAGGACGTGCGCGTGCGCCGCGCCCTGTCGCTCG
CGATCAACCGGCATGAAATCAACATGGTCTGCTTTTACGGATTGGCCAAGGAAAGCGCCGACACCGTGCTCCCGGAAAGT
CCGCTTTACCGGCAGGAATTTGCGGACGCCTGGAGCGCTTTCGATCGTGCGGCGGCCAACAGGCTGCTCGATGAAGCGGG
TTTCGACAAGCGCGACAATGCCGGCCTTCGGCTCCTGCCGGATGGTCGACCCGCCTATATCATCGTCGAAACGACAGGCG
AAAGCACACTCGAAACCGATGTCATGGAACTGGTGACGGATCACTGGCGACATATCGGCATTGCGGTTTCGGTGCGCCCC
ACCCAGCGCGACGTCTTCCGCAAGCGCGCGATGGGCGGCGAGGTGCTGATGTCGGTATGGATGGGCATGGACAATGGCGT
GCCCACACCTGACATGCTGCCTTCCGGTCTCGCGCCCACTGGCGACGATCAGCTGCAATGGCCGGTCTGGGGCATTCATT
ATCTGTCCGGCGGCCGCGAGGGCAAGGAGCCCGACCTGCCGGAGGCGGCGCATCTTCTCAATCTCCTCAAAAAATGGCGC
AGAAGCGTCACCGAGGAAGAACGGGAGGCGATCTGGCTGGAAATGCTCGGTATTTATACCCAGCAGGTGTTTTCGATCGG
CATCGTCAACGGCGCGCTGCAACCCGTCGTCCATGTCAAACGCATGCGAAATGTGCCGGACAAGGCGCTTTTCGGTTATG
AGCCCACATCCTATCTCGGCGTCTATATGCCGGATGCCTTCTGGTATGACGGAGACGCCTGA

Upstream 100 bases:

>100_bases
AGTTCCGGGACGAGGGTGATTGCGAGATGATATCAGCCGATCTCGGCGAAGGCCATTTCGTCCTTGCCAACGGCAATGCC
GATATCAGGGAGCTTCGCCC

Downstream 100 bases:

>100_bases
TATGCTGCGGTATATAATCAAGCGCATCCTCGTCATGATCCCCACGCTGATCCTGATCTCGATGCTGGTCTTCACCATCA
TCGAACTGCCGCCGGGCGAT

Product: ABC transporter, substrate binding protein (oligopeptide)

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MITRRTTLALLASVFLPAYARAAYVDPAYFKDKREKGELPDVAERLPKNPRVIDMKALGREPGKHGGSVRMLIGGQRDIR
LMPISNYARLVGYDEKFELHPDILESYEVQEERIFTFKLREGHKWSDGSDFTSEDFRYFWEDVALNKEIHKGGPPIELLV
NNNPPLIEVVDRLTVRYTWEGPNPDFLAKLAAASPARLFLPAAYMKQFHVKYQTAENLAKLIKKNKADDWSGLHIKMSRQ
VRPENPALPTLDAWRNTTSPPAEQFVFERNPYYHRVDENGLQLPYLDRFLLNVTSSDIISAKTASGDSDLQYFGLDFADY
TFLKDAEKRFPLKVNLYKRSQGSRIALLPNLNCADPVWRTAFQDVRVRRALSLAINRHEINMVCFYGLAKESADTVLPES
PLYRQEFADAWSAFDRAAANRLLDEAGFDKRDNAGLRLLPDGRPAYIIVETTGESTLETDVMELVTDHWRHIGIAVSVRP
TQRDVFRKRAMGGEVLMSVWMGMDNGVPTPDMLPSGLAPTGDDQLQWPVWGIHYLSGGREGKEPDLPEAAHLLNLLKKWR
RSVTEEEREAIWLEMLGIYTQQVFSIGIVNGALQPVVHVKRMRNVPDKALFGYEPTSYLGVYMPDAFWYDGDA

Sequences:

>Translated_633_residues
MITRRTTLALLASVFLPAYARAAYVDPAYFKDKREKGELPDVAERLPKNPRVIDMKALGREPGKHGGSVRMLIGGQRDIR
LMPISNYARLVGYDEKFELHPDILESYEVQEERIFTFKLREGHKWSDGSDFTSEDFRYFWEDVALNKEIHKGGPPIELLV
NNNPPLIEVVDRLTVRYTWEGPNPDFLAKLAAASPARLFLPAAYMKQFHVKYQTAENLAKLIKKNKADDWSGLHIKMSRQ
VRPENPALPTLDAWRNTTSPPAEQFVFERNPYYHRVDENGLQLPYLDRFLLNVTSSDIISAKTASGDSDLQYFGLDFADY
TFLKDAEKRFPLKVNLYKRSQGSRIALLPNLNCADPVWRTAFQDVRVRRALSLAINRHEINMVCFYGLAKESADTVLPES
PLYRQEFADAWSAFDRAAANRLLDEAGFDKRDNAGLRLLPDGRPAYIIVETTGESTLETDVMELVTDHWRHIGIAVSVRP
TQRDVFRKRAMGGEVLMSVWMGMDNGVPTPDMLPSGLAPTGDDQLQWPVWGIHYLSGGREGKEPDLPEAAHLLNLLKKWR
RSVTEEEREAIWLEMLGIYTQQVFSIGIVNGALQPVVHVKRMRNVPDKALFGYEPTSYLGVYMPDAFWYDGDA
>Mature_633_residues
MITRRTTLALLASVFLPAYARAAYVDPAYFKDKREKGELPDVAERLPKNPRVIDMKALGREPGKHGGSVRMLIGGQRDIR
LMPISNYARLVGYDEKFELHPDILESYEVQEERIFTFKLREGHKWSDGSDFTSEDFRYFWEDVALNKEIHKGGPPIELLV
NNNPPLIEVVDRLTVRYTWEGPNPDFLAKLAAASPARLFLPAAYMKQFHVKYQTAENLAKLIKKNKADDWSGLHIKMSRQ
VRPENPALPTLDAWRNTTSPPAEQFVFERNPYYHRVDENGLQLPYLDRFLLNVTSSDIISAKTASGDSDLQYFGLDFADY
TFLKDAEKRFPLKVNLYKRSQGSRIALLPNLNCADPVWRTAFQDVRVRRALSLAINRHEINMVCFYGLAKESADTVLPES
PLYRQEFADAWSAFDRAAANRLLDEAGFDKRDNAGLRLLPDGRPAYIIVETTGESTLETDVMELVTDHWRHIGIAVSVRP
TQRDVFRKRAMGGEVLMSVWMGMDNGVPTPDMLPSGLAPTGDDQLQWPVWGIHYLSGGREGKEPDLPEAAHLLNLLKKWR
RSVTEEEREAIWLEMLGIYTQQVFSIGIVNGALQPVVHVKRMRNVPDKALFGYEPTSYLGVYMPDAFWYDGDA

Specific function: Probably involved in an alpha-galactosides intake transport system [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

None

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 72128; Mature: 72128

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITRRTTLALLASVFLPAYARAAYVDPAYFKDKREKGELPDVAERLPKNPRVIDMKALGR
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHCCCCCHHHHHCCCCCCEEEHHHHCC
EPGKHGGSVRMLIGGQRDIRLMPISNYARLVGYDEKFELHPDILESYEVQEERIFTFKLR
CCCCCCCEEEEEECCCCCEEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCCCEEEEEEEC
EGHKWSDGSDFTSEDFRYFWEDVALNKEIHKGGPPIELLVNNNPPLIEVVDRLTVRYTWE
CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCCHHHHCCCEEEEEEEC
GPNPDFLAKLAAASPARLFLPAAYMKQFHVKYQTAENLAKLIKKNKADDWSGLHIKMSRQ
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
VRPENPALPTLDAWRNTTSPPAEQFVFERNPYYHRVDENGLQLPYLDRFLLNVTSSDIIS
CCCCCCCCCCHHHHCCCCCCCHHHHEECCCCCEEECCCCCCCCHHHHHHHHHCCCCHHEE
AKTASGDSDLQYFGLDFADYTFLKDAEKRFPLKVNLYKRSQGSRIALLPNLNCADPVWRT
EECCCCCCCCEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCHHHHH
AFQDVRVRRALSLAINRHEINMVCFYGLAKESADTVLPESPLYRQEFADAWSAFDRAAAN
HHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
RLLDEAGFDKRDNAGLRLLPDGRPAYIIVETTGESTLETDVMELVTDHWRHIGIAVSVRP
HHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEEECC
TQRDVFRKRAMGGEVLMSVWMGMDNGVPTPDMLPSGLAPTGDDQLQWPVWGIHYLSGGRE
CHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEEECCCCC
GKEPDLPEAAHLLNLLKKWRRSVTEEEREAIWLEMLGIYTQQVFSIGIVNGALQPVVHVK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMRNVPDKALFGYEPTSYLGVYMPDAFWYDGDA
HHHCCCCHHHCCCCCCCEEEEECCCCEECCCCC
>Mature Secondary Structure
MITRRTTLALLASVFLPAYARAAYVDPAYFKDKREKGELPDVAERLPKNPRVIDMKALGR
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHCCCCCHHHHHCCCCCCEEEHHHHCC
EPGKHGGSVRMLIGGQRDIRLMPISNYARLVGYDEKFELHPDILESYEVQEERIFTFKLR
CCCCCCCEEEEEECCCCCEEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCCCEEEEEEEC
EGHKWSDGSDFTSEDFRYFWEDVALNKEIHKGGPPIELLVNNNPPLIEVVDRLTVRYTWE
CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCCHHHHCCCEEEEEEEC
GPNPDFLAKLAAASPARLFLPAAYMKQFHVKYQTAENLAKLIKKNKADDWSGLHIKMSRQ
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
VRPENPALPTLDAWRNTTSPPAEQFVFERNPYYHRVDENGLQLPYLDRFLLNVTSSDIIS
CCCCCCCCCCHHHHCCCCCCCHHHHEECCCCCEEECCCCCCCCHHHHHHHHHCCCCHHEE
AKTASGDSDLQYFGLDFADYTFLKDAEKRFPLKVNLYKRSQGSRIALLPNLNCADPVWRT
EECCCCCCCCEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCHHHHH
AFQDVRVRRALSLAINRHEINMVCFYGLAKESADTVLPESPLYRQEFADAWSAFDRAAAN
HHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
RLLDEAGFDKRDNAGLRLLPDGRPAYIIVETTGESTLETDVMELVTDHWRHIGIAVSVRP
HHHHHCCCCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEEECC
TQRDVFRKRAMGGEVLMSVWMGMDNGVPTPDMLPSGLAPTGDDQLQWPVWGIHYLSGGRE
CHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEEECCCCC
GKEPDLPEAAHLLNLLKKWRRSVTEEEREAIWLEMLGIYTQQVFSIGIVNGALQPVVHVK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMRNVPDKALFGYEPTSYLGVYMPDAFWYDGDA
HHHCCCCHHHCCCCCCCEEEEECCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9791127; 11481431 [H]