Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185252
Identifier: 159185252
GI number: 159185252
Start: 2488378
End: 2489418
Strand: Direct
Name: 159185252
Synonym: Atu2519
Alternate gene names: NA
Gene position: 2488378-2489418 (Clockwise)
Preceding gene: 159185248
Following gene: 15889786
Centisome position: 87.57
GC content: 61.86
Gene sequence:
>1041_bases ATGACCGATCAAAAACCCGTACCCGTCTTCGACGGCCACAACGACGTGCTTCTGCGGTTATGGCGTTCCGGCAATACCTC CCCTGAAACGCTTCTGATCGAGGGTGACACGGTTGGCCACATCGACCTGCCGCGTGCCAGAAAGGGCGGCCTCGCCGGCG GCCTCTGCGCCATCTACGTGCCCTCGCCCAGCATGGAAAAGGACGCAAACGGTGATTTCTCGACACCGACCGAAGCCGAC GCTCTGAAGGCGACGCTTGGCATGGCGGCCCTGCTGTTCCGCGCCGAAAAGCAATCCGCAGGCGCACTCAAGGTCTGCCG CACCGCCGCCGATATCCGCAGTGCCATGGCAGAGGGCGCCTTCGCCTCGGTTTTCCATATCGAGGGCGCGGAAGCGATCG GCGACGATCTGGATGCGCTGCACGTTCTGCACGAGGCGGGTCTGCGCACGCTCGGACCGGTCTGGAGCCGCCCGAACATC TTCGCTTACGGCGTTCCCTTCCGTTTCCCCTCCACGCCGGATATCGGCCCGGGTCTGACCGATACCGGCAAGCGGCTGGT AAAAACCTGCAATGAGCTGAAGATCATGGTCGATCTCTCGCACATGAACGAACAGGGTTTTTGGGATATCGCCAAGATCT CAGACGCGCCGCTGGTGGCGTCGCATTCCAACGCCTACGCGCTGTGCAATCACAGTCGTAACCTCACGGACCGCCAGCTG GACGCCATCCGCGATACGGGCGGCCTTGCCGGCATCAATTTCGGCGTGCTGTTCCTGCGTCAGGACGGCGTGAAGAACCC GAATACCGACCTCAACGAACTTGTCCGCCATGTGGATTATATCGTCAACCGCATCGGTATCGACCACGTCGCGCTCGGTT CGGATTTCGACGGCACCACCATTCCCGCCGCCATGAAGGATGCGGGCGACCTGCAATTGCTGGTCGAAGCCCTGCGCAAG GGCGGTTATGACAACGAGGCGCTCGCCAGGATCTGCCACGGCAATTGGGTCCGCGTTCTGGAAAAGACCTGGGGCGCATA A
Upstream 100 bases:
>100_bases TGGATTGCATTTGCTCCCGCCTTGACCTTTCCTCTACCAATTCCCAAAAGTCTGAATAGACGCGCGTCCGCGCCCTCCCC CTATCCGAAGGTGAATGACC
Downstream 100 bases:
>100_bases AGACACTTCGGTTCTGCACTCCGGCGCCAAAGCGCCGGAGACAGGAAGCGGCGGGGCCTCAGGCCTTGGCCGCTTTTTTC TTGCCCGTGGCGCGAAAAGC
Product: dipeptidase
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MTDQKPVPVFDGHNDVLLRLWRSGNTSPETLLIEGDTVGHIDLPRARKGGLAGGLCAIYVPSPSMEKDANGDFSTPTEAD ALKATLGMAALLFRAEKQSAGALKVCRTAADIRSAMAEGAFASVFHIEGAEAIGDDLDALHVLHEAGLRTLGPVWSRPNI FAYGVPFRFPSTPDIGPGLTDTGKRLVKTCNELKIMVDLSHMNEQGFWDIAKISDAPLVASHSNAYALCNHSRNLTDRQL DAIRDTGGLAGINFGVLFLRQDGVKNPNTDLNELVRHVDYIVNRIGIDHVALGSDFDGTTIPAAMKDAGDLQLLVEALRK GGYDNEALARICHGNWVRVLEKTWGA
Sequences:
>Translated_346_residues MTDQKPVPVFDGHNDVLLRLWRSGNTSPETLLIEGDTVGHIDLPRARKGGLAGGLCAIYVPSPSMEKDANGDFSTPTEAD ALKATLGMAALLFRAEKQSAGALKVCRTAADIRSAMAEGAFASVFHIEGAEAIGDDLDALHVLHEAGLRTLGPVWSRPNI FAYGVPFRFPSTPDIGPGLTDTGKRLVKTCNELKIMVDLSHMNEQGFWDIAKISDAPLVASHSNAYALCNHSRNLTDRQL DAIRDTGGLAGINFGVLFLRQDGVKNPNTDLNELVRHVDYIVNRIGIDHVALGSDFDGTTIPAAMKDAGDLQLLVEALRK GGYDNEALARICHGNWVRVLEKTWGA >Mature_345_residues TDQKPVPVFDGHNDVLLRLWRSGNTSPETLLIEGDTVGHIDLPRARKGGLAGGLCAIYVPSPSMEKDANGDFSTPTEADA LKATLGMAALLFRAEKQSAGALKVCRTAADIRSAMAEGAFASVFHIEGAEAIGDDLDALHVLHEAGLRTLGPVWSRPNIF AYGVPFRFPSTPDIGPGLTDTGKRLVKTCNELKIMVDLSHMNEQGFWDIAKISDAPLVASHSNAYALCNHSRNLTDRQLD AIRDTGGLAGINFGVLFLRQDGVKNPNTDLNELVRHVDYIVNRIGIDHVALGSDFDGTTIPAAMKDAGDLQLLVEALRKG GYDNEALARICHGNWVRVLEKTWGA
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI189458885, Length=338, Percent_Identity=27.5147928994083, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI4758190, Length=338, Percent_Identity=27.5147928994083, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI11641269, Length=336, Percent_Identity=26.1904761904762, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI193211608, Length=340, Percent_Identity=23.8235294117647, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI193211610, Length=340, Percent_Identity=23.8235294117647, Blast_Score=96, Evalue=7e-20, Organism=Drosophila melanogaster, GI221475880, Length=347, Percent_Identity=29.3948126801153, Blast_Score=149, Evalue=2e-36, Organism=Drosophila melanogaster, GI281362638, Length=352, Percent_Identity=29.5454545454545, Blast_Score=135, Evalue=5e-32, Organism=Drosophila melanogaster, GI281362636, Length=352, Percent_Identity=29.5454545454545, Blast_Score=135, Evalue=5e-32, Organism=Drosophila melanogaster, GI161083233, Length=346, Percent_Identity=26.5895953757225, Blast_Score=115, Evalue=5e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 37288; Mature: 37157
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQKPVPVFDGHNDVLLRLWRSGNTSPETLLIEGDTVGHIDLPRARKGGLAGGLCAIYV CCCCCCCCEECCCCCEEHEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE PSPSMEKDANGDFSTPTEADALKATLGMAALLFRAEKQSAGALKVCRTAADIRSAMAEGA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC FASVFHIEGAEAIGDDLDALHVLHEAGLRTLGPVWSRPNIFAYGVPFRFPSTPDIGPGLT CEEEEEECCHHHHCCHHHHHHHHHHHCCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCC DTGKRLVKTCNELKIMVDLSHMNEQGFWDIAKISDAPLVASHSNAYALCNHSRNLTDRQL HHHHHHHHHHHHEEEEEEECCCCCCCCEEEECCCCCCEEEECCCEEEEECCCCCCCHHHH DAIRDTGGLAGINFGVLFLRQDGVKNPNTDLNELVRHVDYIVNRIGIDHVALGSDFDGTT HHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCC IPAAMKDAGDLQLLVEALRKGGYDNEALARICHGNWVRVLEKTWGA CCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC >Mature Secondary Structure TDQKPVPVFDGHNDVLLRLWRSGNTSPETLLIEGDTVGHIDLPRARKGGLAGGLCAIYV CCCCCCCEECCCCCEEHEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE PSPSMEKDANGDFSTPTEADALKATLGMAALLFRAEKQSAGALKVCRTAADIRSAMAEGA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC FASVFHIEGAEAIGDDLDALHVLHEAGLRTLGPVWSRPNIFAYGVPFRFPSTPDIGPGLT CEEEEEECCHHHHCCHHHHHHHHHHHCCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCC DTGKRLVKTCNELKIMVDLSHMNEQGFWDIAKISDAPLVASHSNAYALCNHSRNLTDRQL HHHHHHHHHHHHEEEEEEECCCCCCCCEEEECCCCCCEEEECCCEEEEECCCCCCCHHHH DAIRDTGGLAGINFGVLFLRQDGVKNPNTDLNELVRHVDYIVNRIGIDHVALGSDFDGTT HHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCC IPAAMKDAGDLQLLVEALRKGGYDNEALARICHGNWVRVLEKTWGA CCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]