Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159185228
Identifier: 159185228
GI number: 159185228
Start: 2436327
End: 2437406
Strand: Direct
Name: 159185228
Synonym: Atu2467
Alternate gene names: NA
Gene position: 2436327-2437406 (Clockwise)
Preceding gene: 15889735
Following gene: 15889739
Centisome position: 85.74
GC content: 60.19
Gene sequence:
>1080_bases ATGATCTTTTCCATGCGTATCTGCCTTTTTCTCTGCCTCTGTCTTTGCATGGCCTCACCCGCGCTTGCGCAGGTCGCCGT TTTCCCGGCCCTATCGGGCAAGACAGATGCCCAAACGCTGGTGGTCTATTCCTCTCTGGATGAACCGCTGGCGACGCCGA TGATCGAAGGCTTTCAAAAGGCCAACCCCGATATTGCCGTCCATTACGAGGACATGCTGACCGGTGAAATCTACGACCGC ATCGTCAAGGAAACCGATGCCGGCAAGAAGACCGCCGATTTCGCCTTCTCTTCCGCCATGGACCTGCAGGTGAAACTGAG CAATGACGGTTACGCCCAACGCTCGGATCTTGCCATGAGCGCCCGCTGGCCCGCCTGGGCGAACTGGCGCAACACGGCTT ACGCGCTGACCTTCGAGCCGGCGGTCTTCGTCTACCACAAGCCGAGTTTCACCACCGAAAAACCGCCCGCCACCCGCGCC GAATTTGTCGATTATCTCGAACGCCACGCAAAAGAGGTGCATGGCCGCATCGCCACCTACGACATCGAGCGCTCCGGCGT CGGCTTCCTGTTCATGTCAAGGGATCAGGAGCAGTTCGGCGATATATGGAGCGTCATCAAGGCCATGGGCGCGGCGGGCG TGAAGGTCTATTCCACCTCCTCGGCCATTCTGGAGCGTGTATCCGACGGCCGTTTCGTGCTGGGTTACAATATTCTCGGC TCCTATGCCGCAGACTGGGCCTCGCGCCACCCCGATGTCGGCATCGTGCTGCCGAAGGATTATACCGTGGTCATGTCGCG CATCGGATTGGTGCCGGAGGCCGCTGCCAATCCCGAGCTCGGCCGCCGTTACCTCGAATTCTTCATGTCCAAGGAAGGCC AGACGATCATGGCCCGGCAGCTGCAGATCCCGGCCGTCAGCCCTGAAGTGGCGGGTGAAAACACCGCCAACACCATGCAG GCCATCCATGGCGCGCAATTGCGGCCCGTGCCCGTCAGCCCCGGGCTTATGGTCTATCTGGATCAGGTCAAGCGCAGCCG GTTGATCGAACGCTGGAACGAAGCGTTGCGATCGCAATAG
Upstream 100 bases:
>100_bases ACCTGATTGTCCTCGACCAGCAAAATACGCAAATTTTCCCCTCCACAATATCCTAATTTAGCCAAGCCCTGCCCGCTTGT GAATGGCAAGCGCCTGCGGC
Downstream 100 bases:
>100_bases CATCCCCGCCTCCCGCATCGCGGTGCTGGCCAAACGCACAAAGCTATCTCAAGTCATTGATTGAAAGAACGATTTTCGCC GTGCAAGCGCGCGTCGACTG
Product: ABC transporter, substrate binding protein (iron)
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MIFSMRICLFLCLCLCMASPALAQVAVFPALSGKTDAQTLVVYSSLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDR IVKETDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDLAMSARWPAWANWRNTAYALTFEPAVFVYHKPSFTTEKPPATRA EFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRDQEQFGDIWSVIKAMGAAGVKVYSTSSAILERVSDGRFVLGYNILG SYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQLQIPAVSPEVAGENTANTMQ AIHGAQLRPVPVSPGLMVYLDQVKRSRLIERWNEALRSQ
Sequences:
>Translated_359_residues MIFSMRICLFLCLCLCMASPALAQVAVFPALSGKTDAQTLVVYSSLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDR IVKETDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDLAMSARWPAWANWRNTAYALTFEPAVFVYHKPSFTTEKPPATRA EFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRDQEQFGDIWSVIKAMGAAGVKVYSTSSAILERVSDGRFVLGYNILG SYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQLQIPAVSPEVAGENTANTMQ AIHGAQLRPVPVSPGLMVYLDQVKRSRLIERWNEALRSQ >Mature_359_residues MIFSMRICLFLCLCLCMASPALAQVAVFPALSGKTDAQTLVVYSSLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDR IVKETDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDLAMSARWPAWANWRNTAYALTFEPAVFVYHKPSFTTEKPPATRA EFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRDQEQFGDIWSVIKAMGAAGVKVYSTSSAILERVSDGRFVLGYNILG SYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQLQIPAVSPEVAGENTANTMQ AIHGAQLRPVPVSPGLMVYLDQVKRSRLIERWNEALRSQ
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39902; Mature: 39902
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFSMRICLFLCLCLCMASPALAQVAVFPALSGKTDAQTLVVYSSLDEPLATPMIEGFQK CEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH ANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDLAMS CCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCCCEEE ARWPAWANWRNTAYALTFEPAVFVYHKPSFTTEKPPATRAEFVDYLERHAKEVHGRIATY CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE DIERSGVGFLFMSRDQEQFGDIWSVIKAMGAAGVKVYSTSSAILERVSDGRFVLGYNILG EECCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCEEEEHHHHH SYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQ HHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEHHE LQIPAVSPEVAGENTANTMQAIHGAQLRPVPVSPGLMVYLDQVKRSRLIERWNEALRSQ EECCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MIFSMRICLFLCLCLCMASPALAQVAVFPALSGKTDAQTLVVYSSLDEPLATPMIEGFQK CEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH ANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDLAMS CCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCCCEEE ARWPAWANWRNTAYALTFEPAVFVYHKPSFTTEKPPATRAEFVDYLERHAKEVHGRIATY CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE DIERSGVGFLFMSRDQEQFGDIWSVIKAMGAAGVKVYSTSSAILERVSDGRFVLGYNILG EECCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCEEEEHHHHH SYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMSKEGQTIMARQ HHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEHHE LQIPAVSPEVAGENTANTMQAIHGAQLRPVPVSPGLMVYLDQVKRSRLIERWNEALRSQ EECCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA