Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is ybaN [H]
Identifier: 159185224
GI number: 159185224
Start: 2427791
End: 2428147
Strand: Direct
Name: ybaN [H]
Synonym: Atu2457
Alternate gene names: 159185224
Gene position: 2427791-2428147 (Clockwise)
Preceding gene: 159185220
Following gene: 15889732
Centisome position: 85.44
GC content: 62.75
Gene sequence:
>357_bases ATGCGCCTTTTATACCTCTGTCTTGGCTGGCTGATGGTCGCGACCGGCATTGTCGGCGCGTTTCTTCCCGTTTTGCCCAC CACGCCCTTTCTGCTTCTGGCGCTCTGGTGTTTTTCACGCTCCTCGCCGAAGCTCGAGGCATGGCTTCTCGCTCATCCGA GGTTCGGCCCCTCGCTTCGTCGCTGGCGCGAGCGCGGCGCAATTGCCCGCAAGGCCAAGATCGCCGCACTTTCGGCCATG ACGGTGAGTTATGCCGCCTTCTGGTTTCTGAGCGAGCCGCCACCGTTGCGGGCGACAATCGTCGCCGCCGTCATGCTCGG TTCCGCGCTTTTCATCGTCACGCGGCCGGAAAGCTGA
Upstream 100 bases:
>100_bases CCCGATTTTTCCGGTGCGGCCGGACCTGCGGCAACGGGACCACATCGATTTGGCGCCGGCGCTCTATCCTGAGTGATGAA CTCATGATACCGGCTTGAAC
Downstream 100 bases:
>100_bases AGGCGGGCTCTATCCTCTTGTTTTCGCCGCATTGTCCGACGCCGAAGCGAAAACGCTTCGGCTGGAAATGCTCTAGCGAT GCCGCGATTGCGGCAGCACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 118; Mature: 118
Protein sequence:
>118_residues MRLLYLCLGWLMVATGIVGAFLPVLPTTPFLLLALWCFSRSSPKLEAWLLAHPRFGPSLRRWRERGAIARKAKIAALSAM TVSYAAFWFLSEPPPLRATIVAAVMLGSALFIVTRPES
Sequences:
>Translated_118_residues MRLLYLCLGWLMVATGIVGAFLPVLPTTPFLLLALWCFSRSSPKLEAWLLAHPRFGPSLRRWRERGAIARKAKIAALSAM TVSYAAFWFLSEPPPLRATIVAAVMLGSALFIVTRPES >Mature_118_residues MRLLYLCLGWLMVATGIVGAFLPVLPTTPFLLLALWCFSRSSPKLEAWLLAHPRFGPSLRRWRERGAIARKAKIAALSAM TVSYAAFWFLSEPPPLRATIVAAVMLGSALFIVTRPES
Specific function: Unknown
COG id: COG2832
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786674, Length=115, Percent_Identity=42.6086956521739, Blast_Score=87, Evalue=4e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007401 [H]
Pfam domain/function: PF04304 DUF454 [H]
EC number: NA
Molecular weight: Translated: 13072; Mature: 13072
Theoretical pI: Translated: 11.70; Mature: 11.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLYLCLGWLMVATGIVGAFLPVLPTTPFLLLALWCFSRSSPKLEAWLLAHPRFGPSLR CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHH RWRERGAIARKAKIAALSAMTVSYAAFWFLSEPPPLRATIVAAVMLGSALFIVTRPES HHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCC >Mature Secondary Structure MRLLYLCLGWLMVATGIVGAFLPVLPTTPFLLLALWCFSRSSPKLEAWLLAHPRFGPSLR CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHH RWRERGAIARKAKIAALSAMTVSYAAFWFLSEPPPLRATIVAAVMLGSALFIVTRPES HHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]