Click here to switch to the map view.

The map label for this gene is amaB [H]

Identifier: 159185187

GI number: 159185187

Start: 2355325

End: 2356554

Strand: Direct

Name: amaB [H]

Synonym: Atu2385

Alternate gene names: 159185187

Gene position: 2355325-2356554 (Clockwise)

Preceding gene: 15889652

Following gene: 159185188

Centisome position: 82.89

GC content: 62.76

Gene sequence:

>1230_bases
TTGACGGTCAATGGCGACCGTCTGTGGGACAGTCTGATGGACATGGCGAAAATCGGCCCCGGCATTGCCGGCGGCAATAA
TCGCCGCACGCTGACGGACGAAGATGCGGAAGGCCGCAGCCTGTTCAAGAGCTGGTGCGAAGCGGCCGGCCTGACGATGG
GCGTCGACCGCATGGGAACCATGTTCGCCACCCGCCCCGGCGAGGATCCGGACGCGCTGCCGGTCTATATCGGCAGCCAT
CTCGACACCCAGCCGACCGGCGGCAAGTTCGATGGCGTGCTTGGTGTGCTGGCTGGACTGGAAGTCGTCCGCAGCCTGAA
CGATCTCAACATAAAGACGAAACACCCTATTGTCGTCACCAACTGGTCCAATGAGGAAGGCGCGCGCTTTGCCCCGGCCA
TGCTGGCCTCCGGCGTCTTCGCCGGCATTCACGATCTCGATTACGCCTATAGCCGCACCGATACCGACGGCAAGACCTAT
GGCGACGAGCTGAAGCGCATCGGCTGGCTGGGCGAAGAAGAGGTGGGCGCCCGCAGGATGCATGCCTATTTCGAATATCA
TATCGAGCAGGGGCCGATCCTCGAGGCCGAAGGCAAGCAGATCGGCGTCGTTACCCATGGTCAGGGTCTGTGGTGGCTGG
AAGTGACGCTGACCGGCAAGGAAGCCCATACCGGCTCGACGCCGATGGCGATGCGCGTCAATGCCGGCCTTGCCGCCGCC
CGCATCCTCGAAAAGGTTCAGGAAGTGGCGATGGCCCACCAGCCGGGTGCCGTTGCCGGCGTCGGCCAGATGATCTTCAC
ACCCAATTCGCGTAACGTGCTGCCCGGCAAGGTGGTTTTCACCATCGATCTTCGAACCCCTTCGCAGGCAAAGCTCGACA
ACATGCGCGCCATCTTCGAGCGCGAGGTGCCTGTTATCGCCGAAGAACTCGGCGTCGGCTGCTCGATCGAAGCCATCGGC
CATTTCGATCCCGTCACCTTCGATCCGGTGCTGGTCGGGCGCGTGCGCTCTGCCGCCGAAAGACTGGGTTACACCCACAT
GGACATCATCTCCGGCGCCGGCCACGATGCCTGCTGGACGGCAAGGGTCGCTCCATCAACCATGATCTTTTGCCCCTGCG
TGGGTGGGCTTTCCCATAACGAGGCGGAAGAAATTTCGCCGGAATGGGCCGCCGCCGGCTGCGACGTGCTGCTGCATGCG
GTGCTGGAGACTGCGGAGATCGTGCAATGA

Upstream 100 bases:

>100_bases
ATGGCTGTTATCTTAGCCGGCAAAAACGGGAACGGCACAAGCTTTGCTTCGATAAAAACAAAACGGGTGAGGACTACACT
TCATGACGGCGGGTAAAAAC

Downstream 100 bases:

>100_bases
TCGCCACCATCATCAAAAACGGCACCATCGTCACCGCCGACCTCACCTACAAGGCAGACATCAGGATCGAAGGCGGCAGG
ATCACTGAGATCGGCCCTGA

Product: allantoate amidohydrolase

Products: NA

Alternate protein names: L-carbamoylase [H]

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MTVNGDRLWDSLMDMAKIGPGIAGGNNRRTLTDEDAEGRSLFKSWCEAAGLTMGVDRMGTMFATRPGEDPDALPVYIGSH
LDTQPTGGKFDGVLGVLAGLEVVRSLNDLNIKTKHPIVVTNWSNEEGARFAPAMLASGVFAGIHDLDYAYSRTDTDGKTY
GDELKRIGWLGEEEVGARRMHAYFEYHIEQGPILEAEGKQIGVVTHGQGLWWLEVTLTGKEAHTGSTPMAMRVNAGLAAA
RILEKVQEVAMAHQPGAVAGVGQMIFTPNSRNVLPGKVVFTIDLRTPSQAKLDNMRAIFEREVPVIAEELGVGCSIEAIG
HFDPVTFDPVLVGRVRSAAERLGYTHMDIISGAGHDACWTARVAPSTMIFCPCVGGLSHNEAEEISPEWAAAGCDVLLHA
VLETAEIVQ

Sequences:

>Translated_409_residues
MTVNGDRLWDSLMDMAKIGPGIAGGNNRRTLTDEDAEGRSLFKSWCEAAGLTMGVDRMGTMFATRPGEDPDALPVYIGSH
LDTQPTGGKFDGVLGVLAGLEVVRSLNDLNIKTKHPIVVTNWSNEEGARFAPAMLASGVFAGIHDLDYAYSRTDTDGKTY
GDELKRIGWLGEEEVGARRMHAYFEYHIEQGPILEAEGKQIGVVTHGQGLWWLEVTLTGKEAHTGSTPMAMRVNAGLAAA
RILEKVQEVAMAHQPGAVAGVGQMIFTPNSRNVLPGKVVFTIDLRTPSQAKLDNMRAIFEREVPVIAEELGVGCSIEAIG
HFDPVTFDPVLVGRVRSAAERLGYTHMDIISGAGHDACWTARVAPSTMIFCPCVGGLSHNEAEEISPEWAAAGCDVLLHA
VLETAEIVQ
>Mature_408_residues
TVNGDRLWDSLMDMAKIGPGIAGGNNRRTLTDEDAEGRSLFKSWCEAAGLTMGVDRMGTMFATRPGEDPDALPVYIGSHL
DTQPTGGKFDGVLGVLAGLEVVRSLNDLNIKTKHPIVVTNWSNEEGARFAPAMLASGVFAGIHDLDYAYSRTDTDGKTYG
DELKRIGWLGEEEVGARRMHAYFEYHIEQGPILEAEGKQIGVVTHGQGLWWLEVTLTGKEAHTGSTPMAMRVNAGLAAAR
ILEKVQEVAMAHQPGAVAGVGQMIFTPNSRNVLPGKVVFTIDLRTPSQAKLDNMRAIFEREVPVIAEELGVGCSIEAIGH
FDPVTFDPVLVGRVRSAAERLGYTHMDIISGAGHDACWTARVAPSTMIFCPCVGGLSHNEAEEISPEWAAAGCDVLLHAV
LETAEIVQ

Specific function: Involved In The Anaerobic Utilization Of Allantoin. Converts Allantoate To (S)-Ureidoglycolate And Ammonia. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI1786726, Length=393, Percent_Identity=31.8066157760814, Blast_Score=174, Evalue=8e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.87 [H]

Molecular weight: Translated: 44049; Mature: 43917

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVNGDRLWDSLMDMAKIGPGIAGGNNRRTLTDEDAEGRSLFKSWCEAAGLTMGVDRMGT
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECHHHHHH
MFATRPGEDPDALPVYIGSHLDTQPTGGKFDGVLGVLAGLEVVRSLNDLNIKTKHPIVVT
EEECCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCEEEE
NWSNEEGARFAPAMLASGVFAGIHDLDYAYSRTDTDGKTYGDELKRIGWLGEEEVGARRM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH
HAYFEYHIEQGPILEAEGKQIGVVTHGQGLWWLEVTLTGKEAHTGSTPMAMRVNAGLAAA
HHHHHEECCCCCEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEECCCHHHH
RILEKVQEVAMAHQPGAVAGVGQMIFTPNSRNVLPGKVVFTIDLRTPSQAKLDNMRAIFE
HHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
REVPVIAEELGVGCSIEAIGHFDPVTFDPVLVGRVRSAAERLGYTHMDIISGAGHDACWT
CCCCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEE
ARVAPSTMIFCPCVGGLSHNEAEEISPEWAAAGCDVLLHAVLETAEIVQ
EECCCCEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVNGDRLWDSLMDMAKIGPGIAGGNNRRTLTDEDAEGRSLFKSWCEAAGLTMGVDRMGT
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECHHHHHH
MFATRPGEDPDALPVYIGSHLDTQPTGGKFDGVLGVLAGLEVVRSLNDLNIKTKHPIVVT
EEECCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCEEEE
NWSNEEGARFAPAMLASGVFAGIHDLDYAYSRTDTDGKTYGDELKRIGWLGEEEVGARRM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH
HAYFEYHIEQGPILEAEGKQIGVVTHGQGLWWLEVTLTGKEAHTGSTPMAMRVNAGLAAA
HHHHHEECCCCCEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEECCCHHHH
RILEKVQEVAMAHQPGAVAGVGQMIFTPNSRNVLPGKVVFTIDLRTPSQAKLDNMRAIFE
HHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
REVPVIAEELGVGCSIEAIGHFDPVTFDPVLVGRVRSAAERLGYTHMDIISGAGHDACWT
CCCCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEE
ARVAPSTMIFCPCVGGLSHNEAEEISPEWAAAGCDVLLHAVLETAEIVQ
EECCCCEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9023955; 8285691 [H]