Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159185158
Identifier: 159185158
GI number: 159185158
Start: 2301360
End: 2301722
Strand: Reverse
Name: 159185158
Synonym: Atu2325
Alternate gene names: NA
Gene position: 2301722-2301360 (Counterclockwise)
Preceding gene: 159185159
Following gene: 15889601
Centisome position: 81.0
GC content: 51.24
Gene sequence:
>363_bases ATGAGCGTCGAGCGGCTGAACGTTTATCTTCAAGACATCCGGCAGGTTGCTTCGGAAACCATAGACTTTGTTCAACGGAA CACAAAAGACGAATTTTTGGCTGATCTCGTCCGTCAACGGGCGGTGGCGATGAACCTTCTGATTATTGGCGAGACGACAG CTCGGATCATGGAAGAGTTCCCGGCTTTCGTGGCGGATTTTCCTGATATTCCGTGGGTTAAGATGCGCGGCATGCGGAAC AGGATCGCACATGGTTACATGAGCATCAATCTGGAAACGGTCTGGGATACGACCCAGACGGCGATACCTGACCTTCTGGA CAAACTCTCTCTTCTGCACAATTGGCATGCCCAAGGTGAATGA
Upstream 100 bases:
>100_bases AATTGACGGATATTATGCGGGGCACGGAAATTCACCTGCTGACGCCGGGCGATTTTCCAGAGCGTGTCCGTGTGAAGGTG CTGCAGGAAGCGAAGCCTGT
Downstream 100 bases:
>100_bases CATTTGACTGATTTTCTCGAGATACGGCCTCTCACCAAAGAGGCGTTCACACCCTTCGGTGATGTGATTGAAACGACACC CTCTTCCATGCGCCACATCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 120; Mature: 119
Protein sequence:
>120_residues MSVERLNVYLQDIRQVASETIDFVQRNTKDEFLADLVRQRAVAMNLLIIGETTARIMEEFPAFVADFPDIPWVKMRGMRN RIAHGYMSINLETVWDTTQTAIPDLLDKLSLLHNWHAQGE
Sequences:
>Translated_120_residues MSVERLNVYLQDIRQVASETIDFVQRNTKDEFLADLVRQRAVAMNLLIIGETTARIMEEFPAFVADFPDIPWVKMRGMRN RIAHGYMSINLETVWDTTQTAIPDLLDKLSLLHNWHAQGE >Mature_119_residues SVERLNVYLQDIRQVASETIDFVQRNTKDEFLADLVRQRAVAMNLLIIGETTARIMEEFPAFVADFPDIPWVKMRGMRNR IAHGYMSINLETVWDTTQTAIPDLLDKLSLLHNWHAQGE
Specific function: Unknown
COG id: COG2361
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0331 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008201 [H]
Pfam domain/function: PF01934 DUF86 [H]
EC number: NA
Molecular weight: Translated: 13903; Mature: 13772
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVERLNVYLQDIRQVASETIDFVQRNTKDEFLADLVRQRAVAMNLLIIGETTARIMEEF CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHH PAFVADFPDIPWVKMRGMRNRIAHGYMSINLETVWDTTQTAIPDLLDKLSLLHNWHAQGE HHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SVERLNVYLQDIRQVASETIDFVQRNTKDEFLADLVRQRAVAMNLLIIGETTARIMEEF CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHH PAFVADFPDIPWVKMRGMRNRIAHGYMSINLETVWDTTQTAIPDLLDKLSLLHNWHAQGE HHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]