Click here to switch to the map view.

The map label for this gene is sigD [H]

Identifier: 159185131

GI number: 159185131

Start: 2241972

End: 2242481

Strand: Reverse

Name: sigD [H]

Synonym: Atu2268

Alternate gene names: 159185131

Gene position: 2242481-2241972 (Counterclockwise)

Preceding gene: 159185132

Following gene: 15889542

Centisome position: 78.92

GC content: 60.78

Gene sequence:

>510_bases
ATGCTGCGTTCCCTTGATGGGGACGAAGCCTCCTACAGGCATTTGCTCCACGCCTTGAGGCGACTGCTGGTCGCCTATTA
CGGTCGGCGCATGGCCGATGCGGCTCGAGCCGATGTGGAAGATCTTGTGCAGGAAACCCTGTTGTCGCTTCACGCCAAGC
GGGAGACCTATGACCGTGCGCGACCGTTTACGGCGTGGTTCTTCTCGATAGCGCGCTACAAGCTCATCGATCACTACAGG
GGCAGGGGGAGGCGCATGTTTTCGGAAGTCGAACTCGATGAAACACTGGAAGCGGAGTCGTCCGTCGACGCGGTCACGGC
CCGCATGGATGTGGAGCGGCTGCTCAATGAATTGCCCGAGCGGCAGCGCGACCTCATCCGAAGGGTGAAGCTCGAAGGCC
AGTCGATCGCCGAAGCGGCAGAGAAATCCGGCCAGACCGAGCTTGCGGCGAGGGTCGGCATTCACAGAACGCTGAAAGTC
CTGGCGGCAAAGTTGCGGGGGGACATATGA

Upstream 100 bases:

>100_bases
ATTTTTTTAAAGCCACTATGTAACAATACCCTGCCGATTTGCGAATAACCCGATAGTGACGATGACTGGCAGCCCCTCGG
AAGAAACACTGAAAATGCTG

Downstream 100 bases:

>100_bases
GGAAGACGGAAGACATCATCGAAAAACTGGCGGGTGATCTGAAACCCGTCCCCGCTTCTGCGCTGGAGCGCAGGCTGGCG
CGCGCAGCCTTGCCGGCACT

Product: ECF family RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MLRSLDGDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLHAKRETYDRARPFTAWFFSIARYKLIDHYR
GRGRRMFSEVELDETLEAESSVDAVTARMDVERLLNELPERQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKV
LAAKLRGDI

Sequences:

>Translated_169_residues
MLRSLDGDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLHAKRETYDRARPFTAWFFSIARYKLIDHYR
GRGRRMFSEVELDETLEAESSVDAVTARMDVERLLNELPERQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKV
LAAKLRGDI
>Mature_169_residues
MLRSLDGDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLHAKRETYDRARPFTAWFFSIARYKLIDHYR
GRGRRMFSEVELDETLEAESSVDAVTARMDVERLLNELPERQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKV
LAAKLRGDI

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19482; Mature: 19482

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSLDGDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLHAKRETYDRA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
RPFTAWFFSIARYKLIDHYRGRGRRMFSEVELDETLEAESSVDAVTARMDVERLLNELPE
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKVLAAKLRGDI
HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLRSLDGDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLHAKRETYDRA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
RPFTAWFFSIARYKLIDHYRGRGRRMFSEVELDETLEAESSVDAVTARMDVERLLNELPE
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKVLAAKLRGDI
HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]