Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yjbB [H]
Identifier: 159185120
GI number: 159185120
Start: 2217869
End: 2219521
Strand: Direct
Name: yjbB [H]
Synonym: Atu2245
Alternate gene names: 159185120
Gene position: 2217869-2219521 (Clockwise)
Preceding gene: 15889520
Following gene: 15889523
Centisome position: 78.05
GC content: 60.98
Gene sequence:
>1653_bases ATGCAATCCACAATTGTCATCGTCAACCTTCTCGGCGCCGTTGCGCTGCTGCTCTTCGGCCTTGCCCAGGTGAAGGATGG CGTCACCCGTGCCTTCGGCATGAAACTGCGAAGCGTGCTCGCTACCGGCACCCAGAACGGCCCGCGCTCGTTCTTTTCCG GCTTCTTCGCCACCGTCGCCCTGCAAAGCTCGACGGCGACGGCGCTGACCGTCGCCTCCTTCGCCGAACGGGACCTCATC AAGCCGCGCATGGCGCAGGTGGTGCTGCTTGGCGCCAATGTCGGCACCGCCGTTACCGCCTGGATTGTTGCGGCCGGCGT CGAATGGCTCTCGCCGCTGCTGATCCTTGCCGGCATTATCCTGAAAAAAGGCAGTTCCAATGCCAGACAGGGTGGCGGAA CCGCCGTCATCGGCATCGGCCTGATGCTTCTGTCGCTGCATCTTCTGAGCGGCGCCACCGAACCGATGCGCGCTTCGCCA GCGCTAGGCGTCTTCATCGGCCTGCTGGATGGCGCATGGCCTGTCGCGCTGATCTTTTCCGCCGTGCTCGCCTTCGTCTC CTCCTCCAGCCTTGCCGTCGTGGTGCTCATCCTGTCGCTGACAGCCACTGGCACCTTGTCTACCGGCCTCATCATCGTTC TCATTCTCGGCGCCAATCTTGGCGGTGCCATTCCGCCCGTCATCGCCACGCTCTCCGGTCCGGCATCGGCGCGTCGCATC ACCATCGGCAATCTCGTCGTGCGCACCATCGGCTGCCTGATTGCCATGCCGCTCGCCTCCTATGGCGCAACGTATTTGCA GCAATTGCCGCTTTCGCCCGCCAAACTGCCTGTTGATGCGCATCTCATCTTCAACCTCATTCTGGCGACACTCGCCTGGC CCTTCTCCGGCCTGATATCCGATTTGATGGCTAAGCTGGTGCCCGGCGATCCGAAAGCAGAAGACGGCCCGAATTTCCTC GACCAGCAGGCGCTGGACGTGCCGGTCGTGGCGCTTGCCAATGCCACCCGCGAAGTCCTCAGCGTCGGCGACAGCATCGA GCGGATGCTGATCCGCGCCGAAAACGCCTTCAAGCACAATGATCTGGCGCCGCTTCAGGAAGTGGCCCTGCTCGAAAAGA AGGTCGACCGCCGCCAGCAGGAGGTGAAGGTCTATCTTTCGCAACTGGGCCGCAAGGGACTGACCGACGAGGAAGCGCGC CGTTCGATCGCCATCATCGATTATGCGATCAATCTCGAACATATCGGCGATATCATCGAAAAGGGCATTTGCGAGCAGAT CCGCAAGAAGGTGCTGAACAGCTTCAAATTTTCCGACGACGGCTATGAGGAGCTGAAAACCCTGTTCGACATGACCATCG AGAACCTGCGTGCTGCCCAGAGCATTCTGGTAACAGGCGATTTCGAGCTTGCCCGCCGGTTGATGGAAAGCAAGGTGGAT ATACGCCGCCTCGAAAAACAGTCCTCCAACCGCCATCTGGAGCGGCTGCGTGACGGGCTGGCGGAAAGCATGCAGACCAG TTCGCTGCATCTAGACATGCTGCGCGACCTGAAGCGCATCAACGCCCATATCGTGACGGTGGCACATCCCATTCTGGATG AAAGCGGCGTGCTGATCGAAAGCCGCCTGCGTTACGCCGAACCGCGCGCCTGA
Upstream 100 bases:
>100_bases CGGCCTGTACGGTGAGCATTCACGCTCCTATACTGATTAGCCGGACAATAAAAATCGCTCTCGCCGGGACCGTGCGCCGG CGGGTGTGAGGAGACGTCGC
Downstream 100 bases:
>100_bases GCATTTCGAGGAAAAGCGGCCCTGGTTTTCCGTCCGGAAACACACGAACGCTCTAAAACTCAATCGGCCGAGGGCAGCCG CCGCATGGTGAATTCGATGC
Product: Na+/Pi-cotransporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 550; Mature: 550
Protein sequence:
>550_residues MQSTIVIVNLLGAVALLLFGLAQVKDGVTRAFGMKLRSVLATGTQNGPRSFFSGFFATVALQSSTATALTVASFAERDLI KPRMAQVVLLGANVGTAVTAWIVAAGVEWLSPLLILAGIILKKGSSNARQGGGTAVIGIGLMLLSLHLLSGATEPMRASP ALGVFIGLLDGAWPVALIFSAVLAFVSSSSLAVVVLILSLTATGTLSTGLIIVLILGANLGGAIPPVIATLSGPASARRI TIGNLVVRTIGCLIAMPLASYGATYLQQLPLSPAKLPVDAHLIFNLILATLAWPFSGLISDLMAKLVPGDPKAEDGPNFL DQQALDVPVVALANATREVLSVGDSIERMLIRAENAFKHNDLAPLQEVALLEKKVDRRQQEVKVYLSQLGRKGLTDEEAR RSIAIIDYAINLEHIGDIIEKGICEQIRKKVLNSFKFSDDGYEELKTLFDMTIENLRAAQSILVTGDFELARRLMESKVD IRRLEKQSSNRHLERLRDGLAESMQTSSLHLDMLRDLKRINAHIVTVAHPILDESGVLIESRLRYAEPRA
Sequences:
>Translated_550_residues MQSTIVIVNLLGAVALLLFGLAQVKDGVTRAFGMKLRSVLATGTQNGPRSFFSGFFATVALQSSTATALTVASFAERDLI KPRMAQVVLLGANVGTAVTAWIVAAGVEWLSPLLILAGIILKKGSSNARQGGGTAVIGIGLMLLSLHLLSGATEPMRASP ALGVFIGLLDGAWPVALIFSAVLAFVSSSSLAVVVLILSLTATGTLSTGLIIVLILGANLGGAIPPVIATLSGPASARRI TIGNLVVRTIGCLIAMPLASYGATYLQQLPLSPAKLPVDAHLIFNLILATLAWPFSGLISDLMAKLVPGDPKAEDGPNFL DQQALDVPVVALANATREVLSVGDSIERMLIRAENAFKHNDLAPLQEVALLEKKVDRRQQEVKVYLSQLGRKGLTDEEAR RSIAIIDYAINLEHIGDIIEKGICEQIRKKVLNSFKFSDDGYEELKTLFDMTIENLRAAQSILVTGDFELARRLMESKVD IRRLEKQSSNRHLERLRDGLAESMQTSSLHLDMLRDLKRINAHIVTVAHPILDESGVLIESRLRYAEPRA >Mature_550_residues MQSTIVIVNLLGAVALLLFGLAQVKDGVTRAFGMKLRSVLATGTQNGPRSFFSGFFATVALQSSTATALTVASFAERDLI KPRMAQVVLLGANVGTAVTAWIVAAGVEWLSPLLILAGIILKKGSSNARQGGGTAVIGIGLMLLSLHLLSGATEPMRASP ALGVFIGLLDGAWPVALIFSAVLAFVSSSSLAVVVLILSLTATGTLSTGLIIVLILGANLGGAIPPVIATLSGPASARRI TIGNLVVRTIGCLIAMPLASYGATYLQQLPLSPAKLPVDAHLIFNLILATLAWPFSGLISDLMAKLVPGDPKAEDGPNFL DQQALDVPVVALANATREVLSVGDSIERMLIRAENAFKHNDLAPLQEVALLEKKVDRRQQEVKVYLSQLGRKGLTDEEAR RSIAIIDYAINLEHIGDIIEKGICEQIRKKVLNSFKFSDDGYEELKTLFDMTIENLRAAQSILVTGDFELARRLMESKVD IRRLEKQSSNRHLERLRDGLAESMQTSSLHLDMLRDLKRINAHIVTVAHPILDESGVLIESRLRYAEPRA
Specific function: Unknown
COG id: COG1283
COG function: function code P; Na+/phosphate symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yqeW [H]
Homologues:
Organism=Escherichia coli, GI1790451, Length=533, Percent_Identity=35.6472795497186, Blast_Score=297, Evalue=1e-81,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003841 - InterPro: IPR004633 [H]
Pfam domain/function: PF02690 Na_Pi_cotrans [H]
EC number: NA
Molecular weight: Translated: 58975; Mature: 58975
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSTIVIVNLLGAVALLLFGLAQVKDGVTRAFGMKLRSVLATGTQNGPRSFFSGFFATVA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LQSSTATALTVASFAERDLIKPRMAQVVLLGANVGTAVTAWIVAAGVEWLSPLLILAGII HCCCCHHHHHHHHHHHHHCCCHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LKKGSSNARQGGGTAVIGIGLMLLSLHLLSGATEPMRASPALGVFIGLLDGAWPVALIFS HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH AVLAFVSSSSLAVVVLILSLTATGTLSTGLIIVLILGANLGGAIPPVIATLSGPASARRI HHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEE TIGNLVVRTIGCLIAMPLASYGATYLQQLPLSPAKLPVDAHLIFNLILATLAWPFSGLIS EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DLMAKLVPGDPKAEDGPNFLDQQALDVPVVALANATREVLSVGDSIERMLIRAENAFKHN HHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DLAPLQEVALLEKKVDRRQQEVKVYLSQLGRKGLTDEEARRSIAIIDYAINLEHIGDIIE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEEEEHHHHHHHHHHHH KGICEQIRKKVLNSFKFSDDGYEELKTLFDMTIENLRAAQSILVTGDFELARRLMESKVD HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHH IRRLEKQSSNRHLERLRDGLAESMQTSSLHLDMLRDLKRINAHIVTVAHPILDESGVLIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHCCCCCHHH SRLRYAEPRA HHHHHCCCCC >Mature Secondary Structure MQSTIVIVNLLGAVALLLFGLAQVKDGVTRAFGMKLRSVLATGTQNGPRSFFSGFFATVA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LQSSTATALTVASFAERDLIKPRMAQVVLLGANVGTAVTAWIVAAGVEWLSPLLILAGII HCCCCHHHHHHHHHHHHHCCCHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LKKGSSNARQGGGTAVIGIGLMLLSLHLLSGATEPMRASPALGVFIGLLDGAWPVALIFS HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH AVLAFVSSSSLAVVVLILSLTATGTLSTGLIIVLILGANLGGAIPPVIATLSGPASARRI HHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEE TIGNLVVRTIGCLIAMPLASYGATYLQQLPLSPAKLPVDAHLIFNLILATLAWPFSGLIS EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DLMAKLVPGDPKAEDGPNFLDQQALDVPVVALANATREVLSVGDSIERMLIRAENAFKHN HHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DLAPLQEVALLEKKVDRRQQEVKVYLSQLGRKGLTDEEARRSIAIIDYAINLEHIGDIIE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEEEEHHHHHHHHHHHH KGICEQIRKKVLNSFKFSDDGYEELKTLFDMTIENLRAAQSILVTGDFELARRLMESKVD HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHH IRRLEKQSSNRHLERLRDGLAESMQTSSLHLDMLRDLKRINAHIVTVAHPILDESGVLIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHCCCCCHHH SRLRYAEPRA HHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]