Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is engD [H]
Identifier: 159185112
GI number: 159185112
Start: 2204639
End: 2205742
Strand: Direct
Name: engD [H]
Synonym: Atu2233
Alternate gene names: 159185112
Gene position: 2204639-2205742 (Clockwise)
Preceding gene: 15889507
Following gene: 159185113
Centisome position: 77.58
GC content: 60.78
Gene sequence:
>1104_bases ATGGGCTTCAAATGCGGTATCGTTGGATTGCCAAATGTCGGCAAGTCCACCCTCTTCAACGCGCTGACGAAAACGGCCGC CGCACAGGCTGCCAACTATCCCTTCTGCACCATCGAGCCGAATACCGGCGAAGTTGCCGTGCCGGATCCGCGTATGCAGC AGCTTGCGGCCATCGCCGGTTCGAAGGAAATCATTCCGACCCGCATTTCCTTCGTGGACATTGCCGGCCTGGTGCGCGGC GCGTCAAAGGGTGAAGGCCTCGGCAACAAGTTCCTCGCCAACATCCGCGAAGTCGATGCCGTCGTGCATGTGCTGCGCTG CTTCGAAGACGACGATATCACCCATGTGGAAGGCCGCATCAATCCGGTTGGCGACGCCGAAACGATCGAGACCGAACTGA TGCTCGCCGACCTCGAAAGCCTGGAGCGCCGTGTCGAGCAGACGCGCAAGCGCGCCACCAGCAAGGACAAGGAATCCCTG GCTCAACTGCCGGTCATGGAAGCGGTCATCGCGCTGCTCAACGACGGAAAGCCGGCACGCCTGCTGTTGAAGACGCTGGC GGACGAGGAAATCGAAATCCTCAAAGGCCTCAATCTCCTGACGTCGCACCCGGTGCTGTATGTCTGCAACGTCTCGGAAG CCGACGCATCGTCCGGCAACGAGCACACCGCAGCCGTCGCAGAGATGGCAAAGCAGCAGGGTGCTGAATGCGTGATCATC TCGGCGGCGATCGAGGCCGAAGTTGCACAGCTTCCGGCCGATGAAGCCGAGGAATTCCTCTCGGCCCTCGGCCTTAACGA AGCTGGTCTCGACCGGCTCATCCGTGCCGGTTATCACCTGCTCGACCTCATCACCTATTTCACCGTCGGCCCGAAGGAAA CGCGCGCCTGGACGATCGTGCGCGGCACCAAAGCCCCCGCCGCCGCCGGCGTCATCCATACCGATTTCGAACGCGGCTTC ATCCGCGCCTTCACCATCGGTTTTGACGACTACATCGCCTATAAGGGCGAAGTCGGCGCCAAGGAAGCGGGTAAGGGACG TGACGAAGGCAAGGAATATGTCGTTCAGGACGGCGACGTCATCCACTTCCGCTTTAACACCTGA
Upstream 100 bases:
>100_bases GGGCTTTGCCGGCACAAATCGGCTCGCGGGCTTGACCTTGCCCTGCCCATTCCGCAAAAGGCTCCTCAACGAATTCTTTC AAACGGACAGGTTTCAAGCC
Downstream 100 bases:
>100_bases TCTGGTTTGAACGACGGTTCGAATGAAGCCACCCGGACAATGCGGCACATTTCTTCTCCCCGCCGGGGAGAAGATGTCCG AAGGGACAGATGAGGGGGCC
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMQQLAAIAGSKEIIPTRISFVDIAGLVRG ASKGEGLGNKFLANIREVDAVVHVLRCFEDDDITHVEGRINPVGDAETIETELMLADLESLERRVEQTRKRATSKDKESL AQLPVMEAVIALLNDGKPARLLLKTLADEEIEILKGLNLLTSHPVLYVCNVSEADASSGNEHTAAVAEMAKQQGAECVII SAAIEAEVAQLPADEAEEFLSALGLNEAGLDRLIRAGYHLLDLITYFTVGPKETRAWTIVRGTKAPAAAGVIHTDFERGF IRAFTIGFDDYIAYKGEVGAKEAGKGRDEGKEYVVQDGDVIHFRFNT
Sequences:
>Translated_367_residues MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMQQLAAIAGSKEIIPTRISFVDIAGLVRG ASKGEGLGNKFLANIREVDAVVHVLRCFEDDDITHVEGRINPVGDAETIETELMLADLESLERRVEQTRKRATSKDKESL AQLPVMEAVIALLNDGKPARLLLKTLADEEIEILKGLNLLTSHPVLYVCNVSEADASSGNEHTAAVAEMAKQQGAECVII SAAIEAEVAQLPADEAEEFLSALGLNEAGLDRLIRAGYHLLDLITYFTVGPKETRAWTIVRGTKAPAAAGVIHTDFERGF IRAFTIGFDDYIAYKGEVGAKEAGKGRDEGKEYVVQDGDVIHFRFNT >Mature_366_residues GFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMQQLAAIAGSKEIIPTRISFVDIAGLVRGA SKGEGLGNKFLANIREVDAVVHVLRCFEDDDITHVEGRINPVGDAETIETELMLADLESLERRVEQTRKRATSKDKESLA QLPVMEAVIALLNDGKPARLLLKTLADEEIEILKGLNLLTSHPVLYVCNVSEADASSGNEHTAAVAEMAKQQGAECVIIS AAIEAEVAQLPADEAEEFLSALGLNEAGLDRLIRAGYHLLDLITYFTVGPKETRAWTIVRGTKAPAAAGVIHTDFERGFI RAFTIGFDDYIAYKGEVGAKEAGKGRDEGKEYVVQDGDVIHFRFNT
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=43.6314363143631, Blast_Score=299, Evalue=3e-81, Organism=Homo sapiens, GI58761502, Length=215, Percent_Identity=39.0697674418605, Blast_Score=156, Evalue=3e-38, Organism=Escherichia coli, GI1787454, Length=366, Percent_Identity=57.3770491803279, Blast_Score=419, Evalue=1e-118, Organism=Escherichia coli, GI1789574, Length=130, Percent_Identity=33.0769230769231, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17509631, Length=369, Percent_Identity=43.0894308943089, Blast_Score=286, Evalue=1e-77, Organism=Saccharomyces cerevisiae, GI6319499, Length=372, Percent_Identity=41.3978494623656, Blast_Score=276, Evalue=5e-75, Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=36.6754617414248, Blast_Score=224, Evalue=1e-59, Organism=Saccharomyces cerevisiae, GI6321649, Length=317, Percent_Identity=27.4447949526814, Blast_Score=85, Evalue=1e-17, Organism=Drosophila melanogaster, GI24640873, Length=369, Percent_Identity=42.0054200542005, Blast_Score=279, Evalue=2e-75, Organism=Drosophila melanogaster, GI24640877, Length=369, Percent_Identity=42.0054200542005, Blast_Score=279, Evalue=2e-75, Organism=Drosophila melanogaster, GI24640875, Length=369, Percent_Identity=42.0054200542005, Blast_Score=279, Evalue=2e-75, Organism=Drosophila melanogaster, GI24640879, Length=329, Percent_Identity=39.5136778115502, Blast_Score=225, Evalue=4e-59,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 39565; Mature: 39434
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: PS00626 RCC1_2 ; PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMQQLAAIAG CCEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCHHHHHHHHHCC SKEIIPTRISFVDIAGLVRGASKGEGLGNKFLANIREVDAVVHVLRCFEDDDITHVEGRI CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC NPVGDAETIETELMLADLESLERRVEQTRKRATSKDKESLAQLPVMEAVIALLNDGKPAR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHCCCCHHH LLLKTLADEEIEILKGLNLLTSHPVLYVCNVSEADASSGNEHTAAVAEMAKQQGAECVII HHHHHHCCHHHHHHHCCHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEE SAAIEAEVAQLPADEAEEFLSALGLNEAGLDRLIRAGYHLLDLITYFTVGPKETRAWTIV EHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE RGTKAPAAAGVIHTDFERGFIRAFTIGFDDYIAYKGEVGAKEAGKGRDEGKEYVVQDGDV ECCCCCCCCCCEECCCCCCEEEEEEECCHHHEEECCCCCCCCCCCCCCCCCEEEEECCCE IHFRFNT EEEEECC >Mature Secondary Structure GFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMQQLAAIAG CEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCHHHHHHHHHCC SKEIIPTRISFVDIAGLVRGASKGEGLGNKFLANIREVDAVVHVLRCFEDDDITHVEGRI CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC NPVGDAETIETELMLADLESLERRVEQTRKRATSKDKESLAQLPVMEAVIALLNDGKPAR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHCCCCHHH LLLKTLADEEIEILKGLNLLTSHPVLYVCNVSEADASSGNEHTAAVAEMAKQQGAECVII HHHHHHCCHHHHHHHCCHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEE SAAIEAEVAQLPADEAEEFLSALGLNEAGLDRLIRAGYHLLDLITYFTVGPKETRAWTIV EHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE RGTKAPAAAGVIHTDFERGFIRAFTIGFDDYIAYKGEVGAKEAGKGRDEGKEYVVQDGDV ECCCCCCCCCCEECCCCCCEEEEEEECCHHHEEECCCCCCCCCCCCCCCCCEEEEECCCE IHFRFNT EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA