Click here to switch to the map view.

The map label for this gene is rpoE [H]

Identifier: 159185018

GI number: 159185018

Start: 1989909

End: 1990445

Strand: Direct

Name: rpoE [H]

Synonym: Atu2030

Alternate gene names: 159185018

Gene position: 1989909-1990445 (Clockwise)

Preceding gene: 159185017

Following gene: 15889319

Centisome position: 70.03

GC content: 59.4

Gene sequence:

>537_bases
ATGAATGGTGAAAAGCGGGGGAGCCACTCCCCCGCAACCGGCAGCTTCGAAACGGAGATGCTGGCGTTGATACCCATGCT
GCGCCGTTATTCCCGCAGCCTTTCCCGTTCCGATGCCGATGGCGAGGACCTGTTGCAGGACTGCGTGGAAAAGGCACTTG
CCAACAAAAGGCAATGGCGCGGAACGGGTTTGAAAACATGGGCTTACACGATAATGACGAATCTTTATCGCAACCGCCAC
CGCGCCGAGAAACGTCATCCGTCCGAAAGCCTCGACGGCCATGAGACCATTGCCATCCCGGACACGCTTTCCGACACGCT
GGAGAACGACCGGCTGCATCGCGCGCTAGCACTTCTTTCACCGGATATGCGGGCAGTGCTGATGCTGGTGACGGTGGAAG
GCTACAGCTATCAGGAGGCGGCCGAGACCTTGGCGATCCCGCTCGGCACCGTCATGTCCAGGCTGTCTCGCGCCCGCGAA
ACACTTCGCCAGCATCTGGCGGAGGATAATATCATACCCCTGCGGAGACCACGATGA

Upstream 100 bases:

>100_bases
GACGGCATGCCGCTTTATTACTGGGTCAAGGACACGAAAAAGGGCGACGCCACCGGCGACGGTATGAACGGTGTATGGGA
TGCCGCAAAACCCTGATGGC

Downstream 100 bases:

>100_bases
AACGGCCCGATGCCATAACCGAAGACGATCTGCACGCCTATGTCGACGGACTTCTTTCCGACGACGACCGCGCGGCTGTC
GAGAGCTGGCTGGCTGAAAG

Product: ECF family RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNGEKRGSHSPATGSFETEMLALIPMLRRYSRSLSRSDADGEDLLQDCVEKALANKRQWRGTGLKTWAYTIMTNLYRNRH
RAEKRHPSESLDGHETIAIPDTLSDTLENDRLHRALALLSPDMRAVLMLVTVEGYSYQEAAETLAIPLGTVMSRLSRARE
TLRQHLAEDNIIPLRRPR

Sequences:

>Translated_178_residues
MNGEKRGSHSPATGSFETEMLALIPMLRRYSRSLSRSDADGEDLLQDCVEKALANKRQWRGTGLKTWAYTIMTNLYRNRH
RAEKRHPSESLDGHETIAIPDTLSDTLENDRLHRALALLSPDMRAVLMLVTVEGYSYQEAAETLAIPLGTVMSRLSRARE
TLRQHLAEDNIIPLRRPR
>Mature_178_residues
MNGEKRGSHSPATGSFETEMLALIPMLRRYSRSLSRSDADGEDLLQDCVEKALANKRQWRGTGLKTWAYTIMTNLYRNRH
RAEKRHPSESLDGHETIAIPDTLSDTLENDRLHRALALLSPDMRAVLMLVTVEGYSYQEAAETLAIPLGTVMSRLSRARE
TLRQHLAEDNIIPLRRPR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20239; Mature: 20239

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGEKRGSHSPATGSFETEMLALIPMLRRYSRSLSRSDADGEDLLQDCVEKALANKRQWR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GTGLKTWAYTIMTNLYRNRHRAEKRHPSESLDGHETIAIPDTLSDTLENDRLHRALALLS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHC
PDMRAVLMLVTVEGYSYQEAAETLAIPLGTVMSRLSRARETLRQHLAEDNIIPLRRPR
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNGEKRGSHSPATGSFETEMLALIPMLRRYSRSLSRSDADGEDLLQDCVEKALANKRQWR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GTGLKTWAYTIMTNLYRNRHRAEKRHPSESLDGHETIAIPDTLSDTLENDRLHRALALLS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHC
PDMRAVLMLVTVEGYSYQEAAETLAIPLGTVMSRLSRARETLRQHLAEDNIIPLRRPR
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]