Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is rpoE [H]
Identifier: 159185018
GI number: 159185018
Start: 1989909
End: 1990445
Strand: Direct
Name: rpoE [H]
Synonym: Atu2030
Alternate gene names: 159185018
Gene position: 1989909-1990445 (Clockwise)
Preceding gene: 159185017
Following gene: 15889319
Centisome position: 70.03
GC content: 59.4
Gene sequence:
>537_bases ATGAATGGTGAAAAGCGGGGGAGCCACTCCCCCGCAACCGGCAGCTTCGAAACGGAGATGCTGGCGTTGATACCCATGCT GCGCCGTTATTCCCGCAGCCTTTCCCGTTCCGATGCCGATGGCGAGGACCTGTTGCAGGACTGCGTGGAAAAGGCACTTG CCAACAAAAGGCAATGGCGCGGAACGGGTTTGAAAACATGGGCTTACACGATAATGACGAATCTTTATCGCAACCGCCAC CGCGCCGAGAAACGTCATCCGTCCGAAAGCCTCGACGGCCATGAGACCATTGCCATCCCGGACACGCTTTCCGACACGCT GGAGAACGACCGGCTGCATCGCGCGCTAGCACTTCTTTCACCGGATATGCGGGCAGTGCTGATGCTGGTGACGGTGGAAG GCTACAGCTATCAGGAGGCGGCCGAGACCTTGGCGATCCCGCTCGGCACCGTCATGTCCAGGCTGTCTCGCGCCCGCGAA ACACTTCGCCAGCATCTGGCGGAGGATAATATCATACCCCTGCGGAGACCACGATGA
Upstream 100 bases:
>100_bases GACGGCATGCCGCTTTATTACTGGGTCAAGGACACGAAAAAGGGCGACGCCACCGGCGACGGTATGAACGGTGTATGGGA TGCCGCAAAACCCTGATGGC
Downstream 100 bases:
>100_bases AACGGCCCGATGCCATAACCGAAGACGATCTGCACGCCTATGTCGACGGACTTCTTTCCGACGACGACCGCGCGGCTGTC GAGAGCTGGCTGGCTGAAAG
Product: ECF family RNA polymerase sigma factor
Products: NA
Alternate protein names: Sigma-24 [H]
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MNGEKRGSHSPATGSFETEMLALIPMLRRYSRSLSRSDADGEDLLQDCVEKALANKRQWRGTGLKTWAYTIMTNLYRNRH RAEKRHPSESLDGHETIAIPDTLSDTLENDRLHRALALLSPDMRAVLMLVTVEGYSYQEAAETLAIPLGTVMSRLSRARE TLRQHLAEDNIIPLRRPR
Sequences:
>Translated_178_residues MNGEKRGSHSPATGSFETEMLALIPMLRRYSRSLSRSDADGEDLLQDCVEKALANKRQWRGTGLKTWAYTIMTNLYRNRH RAEKRHPSESLDGHETIAIPDTLSDTLENDRLHRALALLSPDMRAVLMLVTVEGYSYQEAAETLAIPLGTVMSRLSRARE TLRQHLAEDNIIPLRRPR >Mature_178_residues MNGEKRGSHSPATGSFETEMLALIPMLRRYSRSLSRSDADGEDLLQDCVEKALANKRQWRGTGLKTWAYTIMTNLYRNRH RAEKRHPSESLDGHETIAIPDTLSDTLENDRLHRALALLSPDMRAVLMLVTVEGYSYQEAAETLAIPLGTVMSRLSRARE TLRQHLAEDNIIPLRRPR
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing
COG id: COG1595
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: <10 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014284 - InterPro: IPR014293 - InterPro: IPR000838 - InterPro: IPR007627 - InterPro: IPR013249 - InterPro: IPR013325 - InterPro: IPR013324 [H]
Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]
EC number: NA
Molecular weight: Translated: 20239; Mature: 20239
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGEKRGSHSPATGSFETEMLALIPMLRRYSRSLSRSDADGEDLLQDCVEKALANKRQWR CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC GTGLKTWAYTIMTNLYRNRHRAEKRHPSESLDGHETIAIPDTLSDTLENDRLHRALALLS CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHC PDMRAVLMLVTVEGYSYQEAAETLAIPLGTVMSRLSRARETLRQHLAEDNIIPLRRPR CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MNGEKRGSHSPATGSFETEMLALIPMLRRYSRSLSRSDADGEDLLQDCVEKALANKRQWR CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC GTGLKTWAYTIMTNLYRNRHRAEKRHPSESLDGHETIAIPDTLSDTLENDRLHRALALLS CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHC PDMRAVLMLVTVEGYSYQEAAETLAIPLGTVMSRLSRARETLRQHLAEDNIIPLRRPR CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]