Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 159185005

GI number: 159185005

Start: 1954292

End: 1956502

Strand: Reverse

Name: bphB [H]

Synonym: Atu1990

Alternate gene names: 159185005

Gene position: 1956502-1954292 (Counterclockwise)

Preceding gene: 17935883

Following gene: 159185004

Centisome position: 68.85

GC content: 57.71

Gene sequence:

>2211_bases
ATGAGTTCACATACGCCGAAACTGGATAGTTGCGGCGCAGAGCCCATCCACATTCCCGGTGCTATTCAGGAACATGGAGC
CCTTCTGGTTCTGTCCGCGCGGGAATTTTCCGTGGTGCAGGCGAGCGATAATCTCGCCAACTATATTGGTGTGGACCTGC
CAATCGGGGCCGTTGCCACCGAAGCAAACTTGCCGTTCATCTCCGTACTGTCCGCCTGGTATTCCGGCGAGGAGAGCAAT
TTCCGATATGCCTGGGCCGAAAAGAAACTCGATGTTTCGGCGCATCGATCCGGGACCTTGGTTATTCTTGAGGTGGAAAA
GGCAGGAGTGGGCGAATCCGCTGAAAAGCTGATGGGCGAACTCACCAGTCTGGCGAAATATCTGAACAGCGCGCCGTCGC
TGGAGGACGCGCTTTTTCGGACGGCGCAACTGGTGTCCTCGATCAGCGGTCATGACCGTACCCTGATCTATGATTTCGGA
CTGGACTGGAGCGGCCATGTCGTGGCGGAAGCGGGAAGCGGGGCTTTGCCGTCTTATCTCGGCCTTCGCTTTCCGGCGGG
CGACATCCCGCCGCAGGCGCGGCAGCTCTATACCATCAATCGCCTGCGGATGATTCCCGATGTCGATTATAAGCCCGTGC
CGATCAGACCGGAGGTGAATGCGGAAACGGGAGCGGTGCTCGATATGAGCTTTTCACAGCTTCGCAGCGTATCGCCGGTT
CATCTCGAATATATGCGCAATATGGGCACTGCCGCTTCGATGTCGGTGTCCATCGTCGTCAATGGCGCTCTCTGGGGCTT
GATTGCCTGCCACCACGCGACACCGCATTCGGTATCCCTTGCCGTACGTGAAGCCTGTGATTTTGCAGCGCAGCTCCTGT
CGATGCGGATCGCGATGGAGCAGAGTTCCCAGGATGCATCCCGCCGGGTGGAGCTTGGCCACATTCAGGCGCGGCTCTTG
AAAGGCATGGCCGCCGCCGAAAAATGGGTTGATGGCCTGCTGGGAGGCGAAGGTGAAAGAGAAGACCTGCTGAAACAGGT
GGGCGCGGATGGCGCAGCACTTGTCCTGGGCGACGACTATGAGCTGGTCGGCAACACGCCCTCACGCGAGCAGGTTGAAG
AATTGATTCTGTGGCTTGGCGAGCGGGAGATCGCCGATGTCTTCGCGACCGACAATCTTGCCGGCAACTACCCCACCGCC
GCGGCTTATGCTTCCGTTGCGAGCGGCATTATCGCGATGCGGGTTTCGGAGTTGCACGGCAGCTGGCTCATCTGGTTTCG
GCCGGAAGTCATAAAAACGGTGCGCTGGGGCGGCGATCCGCACAAGACGGTGCAGGAGAGCGGGCGCATTCATCCGCGCA
AGTCCTTTGAAATCTGGAAGGAACAATTGCGCAACACCTCCTTTCCCTGGTCAGAGCCCGAACTTGCGGCAGCGAGGGAG
CTTCGCGGCGCGATCATCGGCATTGTCCTGCGCAAGACCGAGGAAATGGCGGATCTGACACGGGAGTTGCAGCGCACCAA
TAAGGAGCTGGAGGCTTTTTCCTATTCCGTTTCGCATGACCTGCGCGCGCCGTTCCGTCATATTGTCGGGTTTGCGCAGT
TGTTGCGGGAGCGCAGCGATGCCCTGGACGAGAAGTCCCTGCATTATCTGCAGATGATATCAGAGGCGGCGCTGGGTGCC
GGCAGGTTGGTGGATGATCTCCTGAATTTTTCACAGCTTGGCCGAACGCAACTCACCCTGAAACCGGTGGATATGCAGAA
GGTGGTGAGCGAAGTTCGCCGCTCTCTTTCACACGCGGTTTCCGATCGCCAGATCGAGTGGCGCATCGGAGCGTTGCCGG
TGATATTCGGGGATCCGACCCTGCTGCGGCAGGTCTGGTACAATCTCATTGAAAACGCCATCAAATATTCGTCCCGGGAG
CCGGTGTCGATCATCACCATTTCTGCGGTTGAAACCGAGGATGACGTCACTTATTCGGTCGAAGACAATGGTGTCGGCTT
TGACATGGCCTATTACAACAAACTTTTTGGCGTGTTTCAGAGGCTGCAGCGGGTGGAGGATTTCGAGGGAACTGGCATTG
GACTTGCGCTGGTGCGACGAATTGTCGAACGCCATCACGGTTTGGTTGGTGCCGAGGGAACTGTCGGTGAGGGAGCCACG
TTCTCCTTCACATTGCCGGTTACGAAAGTTGAAGAGGAAAAAATTGCCTGA

Upstream 100 bases:

>100_bases
TTGCCGAAACGAGCGTTTACATCCCTGCAATAATAAATAGGTTAGCCGCATCTTTTGAGCAGGTCGAACGTTCTTGCAAA
GAGAGCGGCTGGAGAAAGTT

Downstream 100 bases:

>100_bases
ACTCAGACCCATTCTGCTTGTGGAAGATAATCCACGCGATCTGGAACTAACGCTGACCGCTCTTGAGAAATGCCAGCTGG
CGAATGAGGTGGTCGTGGCG

Product: bacteriophytochrome protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 736; Mature: 735

Protein sequence:

>736_residues
MSSHTPKLDSCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGEESN
FRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFG
LDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPV
HLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLL
KGMAAAEKWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTA
AAYASVASGIIAMRVSELHGSWLIWFRPEVIKTVRWGGDPHKTVQESGRIHPRKSFEIWKEQLRNTSFPWSEPELAAARE
LRGAIIGIVLRKTEEMADLTRELQRTNKELEAFSYSVSHDLRAPFRHIVGFAQLLRERSDALDEKSLHYLQMISEAALGA
GRLVDDLLNFSQLGRTQLTLKPVDMQKVVSEVRRSLSHAVSDRQIEWRIGALPVIFGDPTLLRQVWYNLIENAIKYSSRE
PVSIITISAVETEDDVTYSVEDNGVGFDMAYYNKLFGVFQRLQRVEDFEGTGIGLALVRRIVERHHGLVGAEGTVGEGAT
FSFTLPVTKVEEEKIA

Sequences:

>Translated_736_residues
MSSHTPKLDSCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGEESN
FRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFG
LDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPV
HLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLL
KGMAAAEKWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTA
AAYASVASGIIAMRVSELHGSWLIWFRPEVIKTVRWGGDPHKTVQESGRIHPRKSFEIWKEQLRNTSFPWSEPELAAARE
LRGAIIGIVLRKTEEMADLTRELQRTNKELEAFSYSVSHDLRAPFRHIVGFAQLLRERSDALDEKSLHYLQMISEAALGA
GRLVDDLLNFSQLGRTQLTLKPVDMQKVVSEVRRSLSHAVSDRQIEWRIGALPVIFGDPTLLRQVWYNLIENAIKYSSRE
PVSIITISAVETEDDVTYSVEDNGVGFDMAYYNKLFGVFQRLQRVEDFEGTGIGLALVRRIVERHHGLVGAEGTVGEGAT
FSFTLPVTKVEEEKIA
>Mature_735_residues
SSHTPKLDSCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGEESNF
RYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGL
DWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVH
LEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLK
GMAAAEKWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAA
AYASVASGIIAMRVSELHGSWLIWFRPEVIKTVRWGGDPHKTVQESGRIHPRKSFEIWKEQLRNTSFPWSEPELAAAREL
RGAIIGIVLRKTEEMADLTRELQRTNKELEAFSYSVSHDLRAPFRHIVGFAQLLRERSDALDEKSLHYLQMISEAALGAG
RLVDDLLNFSQLGRTQLTLKPVDMQKVVSEVRRSLSHAVSDRQIEWRIGALPVIFGDPTLLRQVWYNLIENAIKYSSREP
VSIITISAVETEDDVTYSVEDNGVGFDMAYYNKLFGVFQRLQRVEDFEGTGIGLALVRRIVERHHGLVGAEGTVGEGATF
SFTLPVTKVEEEKIA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=240, Percent_Identity=27.0833333333333, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI1790436, Length=236, Percent_Identity=32.6271186440678, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1788549, Length=245, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786912, Length=243, Percent_Identity=30.4526748971193, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1786600, Length=221, Percent_Identity=28.9592760180996, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI145693157, Length=248, Percent_Identity=24.1935483870968, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1789149, Length=221, Percent_Identity=26.2443438914027, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1786783, Length=221, Percent_Identity=28.5067873303167, Blast_Score=73, Evalue=8e-14,
Organism=Escherichia coli, GI1788713, Length=253, Percent_Identity=25.6916996047431, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1790346, Length=237, Percent_Identity=27.0042194092827, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1790861, Length=222, Percent_Identity=26.5765765765766, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI87081816, Length=252, Percent_Identity=26.5873015873016, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788393, Length=244, Percent_Identity=25.8196721311475, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788279, Length=256, Percent_Identity=25.78125, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 80966; Mature: 80835

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHTPKLDSCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVAT
CCCCCCCCCCCCCCCEECCCCHHHCCEEEEEECCCEEEEECCCCHHHHCCCCCCCCCEEE
EANLPFISVLSAWYSGEESNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGE
CCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
LTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYL
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCCCCHHH
GLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPV
CCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEECCHHHHHCCCCH
HLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAME
HHHHHHCCCCHHCEEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QSSQDASRRVELGHIQARLLKGMAAAEKWVDGLLGGEGEREDLLKQVGADGAALVLGDDY
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCE
ELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSELHG
EECCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SWLIWFRPEVIKTVRWGGDPHKTVQESGRIHPRKSFEIWKEQLRNTSFPWSEPELAAARE
CEEEEECHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
LRGAIIGIVLRKTEEMADLTRELQRTNKELEAFSYSVSHDLRAPFRHIVGFAQLLRERSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALDEKSLHYLQMISEAALGAGRLVDDLLNFSQLGRTQLTLKPVDMQKVVSEVRRSLSHAV
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
SDRQIEWRIGALPVIFGDPTLLRQVWYNLIENAIKYSSREPVSIITISAVETEDDVTYSV
CCCEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEE
EDNGVGFDMAYYNKLFGVFQRLQRVEDFEGTGIGLALVRRIVERHHGLVGAEGTVGEGAT
ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCE
FSFTLPVTKVEEEKIA
EEEECCCEECCHHCCC
>Mature Secondary Structure 
SSHTPKLDSCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVAT
CCCCCCCCCCCCCCEECCCCHHHCCEEEEEECCCEEEEECCCCHHHHCCCCCCCCCEEE
EANLPFISVLSAWYSGEESNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGE
CCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
LTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYL
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCCCCHHH
GLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPV
CCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEECCHHHHHCCCCH
HLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAME
HHHHHHCCCCHHCEEEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QSSQDASRRVELGHIQARLLKGMAAAEKWVDGLLGGEGEREDLLKQVGADGAALVLGDDY
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCE
ELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSELHG
EECCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SWLIWFRPEVIKTVRWGGDPHKTVQESGRIHPRKSFEIWKEQLRNTSFPWSEPELAAARE
CEEEEECHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
LRGAIIGIVLRKTEEMADLTRELQRTNKELEAFSYSVSHDLRAPFRHIVGFAQLLRERSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALDEKSLHYLQMISEAALGAGRLVDDLLNFSQLGRTQLTLKPVDMQKVVSEVRRSLSHAV
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
SDRQIEWRIGALPVIFGDPTLLRQVWYNLIENAIKYSSREPVSIITISAVETEDDVTYSV
CCCEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEE
EDNGVGFDMAYYNKLFGVFQRLQRVEDFEGTGIGLALVRRIVERHHGLVGAEGTVGEGAT
ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCE
FSFTLPVTKVEEEKIA
EEEECCCEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]