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The map label for this gene is deoR [H]

Identifier: 159184972

GI number: 159184972

Start: 1881707

End: 1882642

Strand: Direct

Name: deoR [H]

Synonym: Atu1904

Alternate gene names: 159184972

Gene position: 1881707-1882642 (Clockwise)

Preceding gene: 15889199

Following gene: 15889201

Centisome position: 66.22

GC content: 62.61

Gene sequence:

>936_bases
ATGATATCCCGCGTGGCGCAGATGTATTTCAGCGAGCACAAACGGCAGGCGGAAATTGCGCAGCATCTCAACCTGTCGCA
GGCCACCGTCTCGCGCATGCTGAAACGTGCGGAGGCGGAAGGCATCGTCCGCACCAGCATCATCCCCCCACCCGGCACCT
ATAGCGATCTGGAAGCGCAGCTGCGCGAGCGTTTCGACCTGCCGGAAGCCATCGTCGTTGATTGCAGCGAGGATCGCGAC
GGCGCGATCATGGCCCGCATCGGTGAGGCTGCCGCACATTTTCTCGAGGTGACCCTGTCGCAGAACGAGATTATCGGCGT
ATCCAGCTGGAGCCAGACGATCTTCAAGATGGTGGAAAACATCCATCCGCTGAAGGGAGCCAAGGCGCGCTATATCGTCC
AGACACTGGGCGGCATGGGCGATCCTTCCGTGCAGACGCATGCGACCCAGATCACCACCCGGCTGGCGCGGCTCACCGAG
GCCGAACCGAAGCTGCTGCCGGTGCCGGGCGTCGCCACATCGCGGGAAGCCAAGCTTCTGATGCTGGCCGATCCCTTCGT
GCGCGAAACCATCGATCTCTTCGGCTCCATCACGCTCGCCATCGTCGGCGTCGGCGCAGTCGAACCGTCGGAGCTTCTCG
CCCGGTCCGGCAACATCTTCTCTACCAAGGAGCTTGCCGATCTCGCACAGGCGGGTGCGGTGGGCGACATATCGCTGCGG
TTCTTCGACAAGGATGGCAAGCCGGTCAAGACGCCGCTCGATGATCGGGTCATCGGCCTGCCGCTGGAAAACCTTTCGAA
TGTCGATCGCGTCATTGCGCTCGCCGGCGGCTTGAAGAAGACCGAGGCGATTGCCGGCGCGCTCCGCACCGGCGTCATCG
ACGTGCTCGTCACCGATAAATTCACCGCCGAACGACTGGTCGGCCAGGAAACATAG

Upstream 100 bases:

>100_bases
GGCGCGATGCGATTGCTCGCTCGACCTTGCCCGTAACCTCGGGTAATGGTGAATAAAAATTCACCATGGAGGGCTTATGG
GCAGGATCAACGAACTTCGG

Downstream 100 bases:

>100_bases
CCAAAATCCCATAAAGGAGGAGACATGAGGCGCTTTGAAGGTCAATCCGTATTCGTGACCGGGGGCAACAAGGGCATCGG
TTACGGCATCGCCCGCCGTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MISRVAQMYFSEHKRQAEIAQHLNLSQATVSRMLKRAEAEGIVRTSIIPPPGTYSDLEAQLRERFDLPEAIVVDCSEDRD
GAIMARIGEAAAHFLEVTLSQNEIIGVSSWSQTIFKMVENIHPLKGAKARYIVQTLGGMGDPSVQTHATQITTRLARLTE
AEPKLLPVPGVATSREAKLLMLADPFVRETIDLFGSITLAIVGVGAVEPSELLARSGNIFSTKELADLAQAGAVGDISLR
FFDKDGKPVKTPLDDRVIGLPLENLSNVDRVIALAGGLKKTEAIAGALRTGVIDVLVTDKFTAERLVGQET

Sequences:

>Translated_311_residues
MISRVAQMYFSEHKRQAEIAQHLNLSQATVSRMLKRAEAEGIVRTSIIPPPGTYSDLEAQLRERFDLPEAIVVDCSEDRD
GAIMARIGEAAAHFLEVTLSQNEIIGVSSWSQTIFKMVENIHPLKGAKARYIVQTLGGMGDPSVQTHATQITTRLARLTE
AEPKLLPVPGVATSREAKLLMLADPFVRETIDLFGSITLAIVGVGAVEPSELLARSGNIFSTKELADLAQAGAVGDISLR
FFDKDGKPVKTPLDDRVIGLPLENLSNVDRVIALAGGLKKTEAIAGALRTGVIDVLVTDKFTAERLVGQET
>Mature_311_residues
MISRVAQMYFSEHKRQAEIAQHLNLSQATVSRMLKRAEAEGIVRTSIIPPPGTYSDLEAQLRERFDLPEAIVVDCSEDRD
GAIMARIGEAAAHFLEVTLSQNEIIGVSSWSQTIFKMVENIHPLKGAKARYIVQTLGGMGDPSVQTHATQITTRLARLTE
AEPKLLPVPGVATSREAKLLMLADPFVRETIDLFGSITLAIVGVGAVEPSELLARSGNIFSTKELADLAQAGAVGDISLR
FFDKDGKPVKTPLDDRVIGLPLENLSNVDRVIALAGGLKKTEAIAGALRTGVIDVLVTDKFTAERLVGQET

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=311, Percent_Identity=30.5466237942122, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787791, Length=305, Percent_Identity=29.5081967213115, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 33621; Mature: 33621

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISRVAQMYFSEHKRQAEIAQHLNLSQATVSRMLKRAEAEGIVRTSIIPPPGTYSDLEAQ
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHH
LRERFDLPEAIVVDCSEDRDGAIMARIGEAAAHFLEVTLSQNEIIGVSSWSQTIFKMVEN
HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCCCEEECCHHHHHHHHHHHH
IHPLKGAKARYIVQTLGGMGDPSVQTHATQITTRLARLTEAEPKLLPVPGVATSREAKLL
CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEE
MLADPFVRETIDLFGSITLAIVGVGAVEPSELLARSGNIFSTKELADLAQAGAVGDISLR
EECCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEE
FFDKDGKPVKTPLDDRVIGLPLENLSNVDRVIALAGGLKKTEAIAGALRTGVIDVLVTDK
EECCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCC
FTAERLVGQET
HHHHHHCCCCC
>Mature Secondary Structure
MISRVAQMYFSEHKRQAEIAQHLNLSQATVSRMLKRAEAEGIVRTSIIPPPGTYSDLEAQ
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHH
LRERFDLPEAIVVDCSEDRDGAIMARIGEAAAHFLEVTLSQNEIIGVSSWSQTIFKMVEN
HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCCCEEECCHHHHHHHHHHHH
IHPLKGAKARYIVQTLGGMGDPSVQTHATQITTRLARLTEAEPKLLPVPGVATSREAKLL
CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEE
MLADPFVRETIDLFGSITLAIVGVGAVEPSELLARSGNIFSTKELADLAQAGAVGDISLR
EECCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEE
FFDKDGKPVKTPLDDRVIGLPLENLSNVDRVIALAGGLKKTEAIAGALRTGVIDVLVTDK
EECCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCC
FTAERLVGQET
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]