Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is rhtB [H]
Identifier: 159184952
GI number: 159184952
Start: 1844353
End: 1844991
Strand: Reverse
Name: rhtB [H]
Synonym: Atu1864
Alternate gene names: 159184952
Gene position: 1844991-1844353 (Counterclockwise)
Preceding gene: 159184953
Following gene: 159184951
Centisome position: 64.93
GC content: 61.82
Gene sequence:
>639_bases ATGCCGCTGGAGAACTGGCTGGCCTTCGTGGCCGCATCCGCCATCATGCTCGCCATTCCGGGACCGACGATCCTGCTGGT GATTTCTTATGCGCTTGGCCATGGTCGCAAGGCGAGCACGGCGACGGTGACGGGCGTGGCGCTCGGTGATTTCACCGCCA TGACGGCCTCGATGCTGGGGCTTGGCGCGCTGCTTGCCACGTCGGCTGCACTTTTCACCGGCCTGAAATGGATCGGTGCT GCTTACCTCATCTATCTCGGCATCAAGCTGTGGCGTTCGCCGGTTGGTGGCGAAGGCGCGGATGGCCAAGGCGTGACGGG CCGTGAAAGGCCGCTCAAAATCTTCCTGCATGCCTATATCGTCACGGCGCTGAACCCCAAGAGCATCGTGTTCTTCGTGG CCTTCCTGCCGCAGTTTCTGGTGCCGACATTGCCGTTTTGGCCGCAGGTGCTGATTTTCGAAGCGACGTTCCTGGTGCTT GCCACCGTGAATGCGGCGCTTTATGGACTTCTGGCAAGTGCCGCCCGTAACACGATCCGCAAGCCGAAGGTTCAGCGCAT CGTCAACCGCACGGGCGGCGGTCTCCTGATTGGCGCCGGTCTCATTGCCTTTGGCTGGAAGAGGGCGGTTTCGGCGTGA
Upstream 100 bases:
>100_bases CGTCCGCTGGATGACAGGGCGGCTTGATCTTCGAAGATTGAGCTTGATACCTCCTGATTTTGGTGGCTTGCTCGACACAT TAGACAAGGGAGACTCAATC
Downstream 100 bases:
>100_bases AACGCCCGTCGATCGCCTGAAATTCGGACATAACAAAATGGCATTGCCGCATATTTTTCTTGCCCTGATCACCGTGTTTT TGTGGGGCTTCAACTTCGTT
Product: putative homoserine/homoserine lactone efflux protein
Products: homoserine lactone [Periplasm]; Proton [Cytoplasm]; homoserine [Periplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MPLENWLAFVAASAIMLAIPGPTILLVISYALGHGRKASTATVTGVALGDFTAMTASMLGLGALLATSAALFTGLKWIGA AYLIYLGIKLWRSPVGGEGADGQGVTGRERPLKIFLHAYIVTALNPKSIVFFVAFLPQFLVPTLPFWPQVLIFEATFLVL ATVNAALYGLLASAARNTIRKPKVQRIVNRTGGGLLIGAGLIAFGWKRAVSA
Sequences:
>Translated_212_residues MPLENWLAFVAASAIMLAIPGPTILLVISYALGHGRKASTATVTGVALGDFTAMTASMLGLGALLATSAALFTGLKWIGA AYLIYLGIKLWRSPVGGEGADGQGVTGRERPLKIFLHAYIVTALNPKSIVFFVAFLPQFLVPTLPFWPQVLIFEATFLVL ATVNAALYGLLASAARNTIRKPKVQRIVNRTGGGLLIGAGLIAFGWKRAVSA >Mature_211_residues PLENWLAFVAASAIMLAIPGPTILLVISYALGHGRKASTATVTGVALGDFTAMTASMLGLGALLATSAALFTGLKWIGAA YLIYLGIKLWRSPVGGEGADGQGVTGRERPLKIFLHAYIVTALNPKSIVFFVAFLPQFLVPTLPFWPQVLIFEATFLVLA TVNAALYGLLASAARNTIRKPKVQRIVNRTGGGLLIGAGLIAFGWKRAVSA
Specific function: Conducts the efflux of homoserine and homoserine lactone [H]
COG id: COG1280
COG function: function code E; Putative threonine efflux protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the rht family [H]
Homologues:
Organism=Escherichia coli, GI48994979, Length=200, Percent_Identity=32.5, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1788099, Length=143, Percent_Identity=32.1678321678322, Blast_Score=74, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004778 - InterPro: IPR001123 [H]
Pfam domain/function: PF01810 LysE [H]
EC number: NA
Molecular weight: Translated: 22338; Mature: 22207
Theoretical pI: Translated: 11.06; Mature: 11.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLENWLAFVAASAIMLAIPGPTILLVISYALGHGRKASTATVTGVALGDFTAMTASMLG CCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHH LGALLATSAALFTGLKWIGAAYLIYLGIKLWRSPVGGEGADGQGVTGRERPLKIFLHAYI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH VTALNPKSIVFFVAFLPQFLVPTLPFWPQVLIFEATFLVLATVNAALYGLLASAARNTIR HHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KPKVQRIVNRTGGGLLIGAGLIAFGWKRAVSA CHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCC >Mature Secondary Structure PLENWLAFVAASAIMLAIPGPTILLVISYALGHGRKASTATVTGVALGDFTAMTASMLG CHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHH LGALLATSAALFTGLKWIGAAYLIYLGIKLWRSPVGGEGADGQGVTGRERPLKIFLHAYI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH VTALNPKSIVFFVAFLPQFLVPTLPFWPQVLIFEATFLVLATVNAALYGLLASAARNTIR HHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KPKVQRIVNRTGGGLLIGAGLIAFGWKRAVSA CHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; homoserine [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + homoserine lactone [Cytoplasm] = Proton [Cytoplasm] + homoserine lactone [Periplasm] Proton [Periplasm] + homoserine [Cytoplasm] = Proton [Cytoplasm] + homoserine [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]