Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is recG [H]
Identifier: 159184915
GI number: 159184915
Start: 1766494
End: 1768599
Strand: Direct
Name: recG [H]
Synonym: Atu1780
Alternate gene names: 159184915
Gene position: 1766494-1768599 (Clockwise)
Preceding gene: 159184913
Following gene: 15889085
Centisome position: 62.17
GC content: 64.2
Gene sequence:
>2106_bases ATGCGCCCGGCCATTCTCGATCCGCTGTTTGCTTCCGTCTCCACCCTTGCCGGCGTGGGGCCGAAGCTTGCCGACCTTTT GGCAAAACTGCTGAGCCGGGAAAGCGCCGACGACACCCGCGTGATCGACCTCCTGTTCCACGCGCCATCAAACGTCATTG ACCGGCGTAACCGCCCGGGCATCGCGCTTGCCGCCCCCGGCGCCATTGTCACCATTCAGGGACGCGTCGACCGGCACCAA CCGCCACCCGCAGGCAATCGCTCCGCCCCCTATCGCGTGTTCCTGCATGACGAGACCGGCGAACTGGCGCTGACCTTCTT CCGCGCCAAGGGCGACTGGCTGTCCAAGGCCCTGCCCGTCGATGAAGAGGTTCTCGTTAGCGGCAAGGTGGACTGGTTCA ACGGCCGCGCCTCCATGGTACACCCGGATTTCATGGTGAAGCTTTCCGAGGCGGAAAACCTGCCCTTGGTGGAAGCGGTT TATCCCATGACGGCCGGGCTCTCCCCTAAAGTGCTGCGGCGGGCGATCGAAGGTGGGCTATCGAAGCTGCCGGTCTTCCC GGAATGGATCGACGAGACGCTCAAGACCCGGCAGGGCTTCGGCGATGTCGCATCGAGCTTCCGCGAGCTGCATGACCCGC GCGACAGCGCAGATATCGACCCGCAGGCCCCGGCGCGCAGACGGCTCGCCTATGACGAATTCCTCGCCGGGCAGCTATCA CTGGCGCTGGTGCGCCAAAGACTGCGCAAGGTGGCAGGCCAGCCGATCCGCGCCAGGGGTGATATCGCCGCAAAAATCCT GTCGCAGCTGCCCTTCTCGCTGACGGCAAGCCAGAGTGCGGCGGTGAAGGACATCCTCACCGATATGGCGGGCGAAGACC GCATGTTGCGGCTGCTGCAGGGCGACGTCGGCGCCGGCAAGACGCTGGTAGCGCTGATGGCCATGGCGACGGCGGTGGAG GCCGGCGGACAGGCGGTGCTGATGGCGCCGACTGAAATCCTTGCCCGCCAACACTTCGCCACCATATCTAAACTTGCAAA GGCCGTAGGGCTTACAGTCGAGGTGCTTACCGGCCGCACCAAGGGCAAGGAACGCCGCGAGATCGAGGAGCGTGTGGCGT CAGGCGAAGCGCAGATCGTCATCGGCACGCACGCGCTGTTTCAGGACAGCGTGAGTTACAAAAACCTCGTGCTGGCCGTG GTGGACGAACAGCACCGTTTCGGCGTGCATCAGCGCCTGCGTCTTACTGCCAAGGGCATCACGCCCCATATGCTGGTCAT GACCGCCACCCCCATTCCGCGCACGCTGGTTCTGGCCGCCTTCGGCGACATGGATGTGTCGAAACTCACCGAAAAACCGG CTGGCCGCAAACCCATCCAGACCGTGACCATCCCGACTGAGCGCATTGGCGATATTGTCGAGCGTCTGCGTGCGGCGCTG AAGGACGGTAAGAAGGCCTACTGGATCTGCCCGCTGGTTGAGGAAACGGAAGAGTCCGACCTGATGTCGGCAGAGGAACG GCATGCGGTTCTGTCGCAGATGCTCGGCGCCAATATAGGCCTCATCCATGGCCGTATGAATGGCCCGGAGAAGGACGCCG CCATGCTCGCTTTCAAGAGTGGCGAAACCCGGCTGCTGGTGGCAACGACGGTAGTGGAAGTGGGCGTCGACGTTCCGGAT GCGACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTTGCCCAGCTGCACCAGCTGCGCGGCCGCGTCGGGCGTGG CGATGAGGCCTCTACCTGCATCCTGCTCTACAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGACTTTCCATCCTGCGTG ACAGCGAGGACGGCTTCCTGATCGCGGAAGAGGATCTGAAGCTGCGCGGAGAAGGCGAACTGCTCGGCACCCGCCAGTCC GGCACGCCGGGCTTCCGTATCGCCAGCCTCGAAGCCCATGCCGATCTCCTGGAAATCGCCCGCAAGGACGCGGCCTATGT CATCGAGCGCGACCCCGAATTGACCGGTCCGCGCGGGGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG CGATCCGCTTCCTGCATGCCGGCTGA
Upstream 100 bases:
>100_bases TCGAAATAATGCCACGGCGGCTAAAATCTGCCGGTGATAAACCGCGTTTGTCGAGGCCCGCGTCTTGCATAACGCGTCCC CTTCCCCGATTTTGCTGACC
Downstream 100 bases:
>100_bases AAGTGAACAACCATGAACATGATCGACCCGCGCCGCCCACCGCCCGCCTTCAGAAAGGGCTACGCGCTCTGCTCACCGCA AAACGTCCTGCAACCCGACA
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 701; Mature: 701
Protein sequence:
>701_residues MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRESADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ PPPAGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS LALVRQRLRKVAGQPIRARGDIAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE AGGQAVLMAPTEILARQHFATISKLAKAVGLTVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMNGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPD ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG
Sequences:
>Translated_701_residues MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRESADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ PPPAGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS LALVRQRLRKVAGQPIRARGDIAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE AGGQAVLMAPTEILARQHFATISKLAKAVGLTVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMNGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPD ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG >Mature_701_residues MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRESADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ PPPAGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS LALVRQRLRKVAGQPIRARGDIAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE AGGQAVLMAPTEILARQHFATISKLAKAVGLTVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMNGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPD ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=675, Percent_Identity=42.6666666666667, Blast_Score=481, Evalue=1e-137, Organism=Escherichia coli, GI1787357, Length=403, Percent_Identity=37.9652605459057, Blast_Score=231, Evalue=8e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 76450; Mature: 76450
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRESADDTRVIDLLFHAPSNVIDRRNRPG CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHEEHHHHHCCHHHHHCCCCCC IALAAPGAIVTIQGRVDRHQPPPAGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPV EEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHCCCC DEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAVYPMTAGLSPKVLRRAIEGGL CCCEEEECCEEEECCCCCEECCHHEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCH SKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS HCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH LALVRQRLRKVAGQPIRARGDIAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQ HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCHHHHHHHH GDVGAGKTLVALMAMATAVEAGGQAVLMAPTEILARQHFATISKLAKAVGLTVEVLTGRT CCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCEEEEEECCC KGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAVVDEQHRFGVHQRLRLTAKGI CCHHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCEEEEEEECCHHHCCHHHHHEEEECCC TPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL CCEEEEEECCCCCCEEEEEECCCCCHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHH KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMNGPEKDAAMLAFKS HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEC GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP CCCEEEEEEEEHHHCCCCCCCEEEEEECHHHCCHHHHHHHHCCCCCCCCCCEEEEEEECC LSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA CCCCCCEEEEEEEECCCCEEEECCCCEEECCCCEEEECCCCCCCEEEEEEHHHHHHHHHH RKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG HCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHEECC >Mature Secondary Structure MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRESADDTRVIDLLFHAPSNVIDRRNRPG CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHEEHHHHHCCHHHHHCCCCCC IALAAPGAIVTIQGRVDRHQPPPAGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPV EEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHCCCC DEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAVYPMTAGLSPKVLRRAIEGGL CCCEEEECCEEEECCCCCEECCHHEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCH SKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS HCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH LALVRQRLRKVAGQPIRARGDIAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQ HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCHHHHHHHH GDVGAGKTLVALMAMATAVEAGGQAVLMAPTEILARQHFATISKLAKAVGLTVEVLTGRT CCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCEEEEEECCC KGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAVVDEQHRFGVHQRLRLTAKGI CCHHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCEEEEEEECCHHHCCHHHHHEEEECCC TPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL CCEEEEEECCCCCCEEEEEECCCCCHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHH KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMNGPEKDAAMLAFKS HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEC GETRLLVATTVVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP CCCEEEEEEEEHHHCCCCCCCEEEEEECHHHCCHHHHHHHHCCCCCCCCCCEEEEEEECC LSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQSGTPGFRIASLEAHADLLEIA CCCCCCEEEEEEEECCCCEEEECCCCEEECCCCEEEECCCCCCCEEEEEEHHHHHHHHHH RKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG HCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]