Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159184836
Identifier: 159184836
GI number: 159184836
Start: 1590187
End: 1591926
Strand: Direct
Name: 159184836
Synonym: Atu1609
Alternate gene names: NA
Gene position: 1590187-1591926 (Clockwise)
Preceding gene: 15888921
Following gene: 159184839
Centisome position: 55.96
GC content: 59.08
Gene sequence:
>1740_bases ATGCGGACCATTCCTTCCCTGCTTCCCCGCTTCCTCAAGGATAAAACGGGCAACATCGCCATTTCGGCCGGGCTCACCGC GCCGCTCTTCATCGGCATATTGGCGCTGGGCGTCGACTACGGTTACCTGACATTGCAGAAACGGCAATTGCAGCAGACCG CAGATCTCGCGGCCATCTCGGCGGCAGCCAATGCCACAGATGCCGAAAAGGCAGTCCAGCAATATTTCGCCCTCAACGGC ATGGATCTCGGCGTCAAGACGGACCAGGGTCTTTTGACCGCCAAGGGGCTGCAACCCTTCGATCCCTTGAATGAATTTGC CAGCAGCAAGGGTTATGCCGAAGTCATCAAGGGTCACTATGAGCCGGATGCGACCGTTCCTGTCGGCAAGCGTTTCGTCG ACAATGCCTTGCCCACCAATGCCATCAAGGTGAACATCGTCGAACAGGGGCAGATATTCTTTGCCTCCGCCTTCACCAAG CCGCCCAAGGTCTCGGCAGTCGGAACGGCCTCATCCCAGAAGATCGCCGCATTTTCGGTGGGATCGCGGCTGGCGAGCCT CGATGAGGGAATTCTCAACAGCCTGCTCGGCGGCCTTCTCGGCACCACGGTGTCGTTGAAACTCATGGATTATCAGGCGC TTCTCGCCGCCGACGTCAATGCGCTGAAGATCGTGGAGGCGCTGGCCATCGATCTCAACCTCACCGCCGGCACCTACAAG GATGTGTTGCAGACGGAAATCAGCTACGGCAAATTCCTCGACGTGCTGACCAAAACCACCGGCTTGCAGCCGGCCGTGGT CAACATTTTGAATACACTGCAAAAAACAGCCAACAAAAGCAACGTCAAGATCAAGCTCGAGGAAATCCTCAATCTCGGTC CCTTCTCCGACAAGCTGATCGGTACGGGTGAAAACCTCAAGGTGACAGCCGGCGTCTTCGATCTCATCAATGCCGCTGCC GTGGCGGGCAATGGCGGCAACCAGCTGGCGCTTAATCTCAACGCCAATCTCCTCGGCCTCGCCTCGGTCAAGGCAACGCT TGCCATCGGTGAACCGCCCGTCGAAACACCGTCGCTCGCCGTCGGCGGCCAGGGCACCATCGTGCGGACCGCGCAGACCC GGCTGGCGGTCAATGTCGTGGTCGACGGGCTGCAGGCCATTGCCGGCCTCAAGGTCAATCTTCCGCTTTATGTGGAAGTC GCCCATGCCGAAGCGCGGCTTGCCGATATTCGCTGCACGGGCGGCGGACAGGGCACGGTGGATGTGGAAGTCGTTCCCGG CGTTGCCGAAATCGCACTCGGCAATGTCGACACCTCGGCCTTTGCCAATTTCGGCAAGGATCCGCGCGTGACCAAGGCAG CCATCGTGGACTCGGCGCTGCTTGCCATCAATGGCAGCGCCCTCATCAACGCCACCAACATGACGAAGACCAAACTGACC TTCACCCAGTCGGATATTACGCAAGCCAAGATCAAGAGCGTCTCGACCAAAGACACCGTCACCACCCTTGTCAGCTCACT GCTGAAGAACCTTAATCTGGATATCCGGCTCCTCTTCCTCAACATTGATCTGGGAGGTTTGGCGGGCATCCAGGCAGCGC TTGCCAACACGCTTGCGGTGGTCACCGCGCCCGTCGATCAGCTGCTCTACAACGTGCTTCTGGTTCTCGGCGTCAAGATC GGCGAAGCCGATGTGCGGGTCACCGACGTTCGCTGCCAGCAGCCGGCACTGGTGCAATAA
Upstream 100 bases:
>100_bases TACGACGCCCGCAACCTGCCGATCTGGAGCCTCTATAGCTATACCCTGCCCGAGCCGGTCATCCGGCGTTTTTCCACCAT CCGGATCGGAGGAGCATGAC
Downstream 100 bases:
>100_bases TCCCGTCACCGCCCATAAAAAAGCCGCCGGGAGAGATCCCGGCGGCTTTTCATTTGATCAGCCCTGATATCAGGCGTTGG CGATTGCCAGACGCTTTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 579; Mature: 579
Protein sequence:
>579_residues MRTIPSLLPRFLKDKTGNIAISAGLTAPLFIGILALGVDYGYLTLQKRQLQQTADLAAISAAANATDAEKAVQQYFALNG MDLGVKTDQGLLTAKGLQPFDPLNEFASSKGYAEVIKGHYEPDATVPVGKRFVDNALPTNAIKVNIVEQGQIFFASAFTK PPKVSAVGTASSQKIAAFSVGSRLASLDEGILNSLLGGLLGTTVSLKLMDYQALLAADVNALKIVEALAIDLNLTAGTYK DVLQTEISYGKFLDVLTKTTGLQPAVVNILNTLQKTANKSNVKIKLEEILNLGPFSDKLIGTGENLKVTAGVFDLINAAA VAGNGGNQLALNLNANLLGLASVKATLAIGEPPVETPSLAVGGQGTIVRTAQTRLAVNVVVDGLQAIAGLKVNLPLYVEV AHAEARLADIRCTGGGQGTVDVEVVPGVAEIALGNVDTSAFANFGKDPRVTKAAIVDSALLAINGSALINATNMTKTKLT FTQSDITQAKIKSVSTKDTVTTLVSSLLKNLNLDIRLLFLNIDLGGLAGIQAALANTLAVVTAPVDQLLYNVLLVLGVKI GEADVRVTDVRCQQPALVQ
Sequences:
>Translated_579_residues MRTIPSLLPRFLKDKTGNIAISAGLTAPLFIGILALGVDYGYLTLQKRQLQQTADLAAISAAANATDAEKAVQQYFALNG MDLGVKTDQGLLTAKGLQPFDPLNEFASSKGYAEVIKGHYEPDATVPVGKRFVDNALPTNAIKVNIVEQGQIFFASAFTK PPKVSAVGTASSQKIAAFSVGSRLASLDEGILNSLLGGLLGTTVSLKLMDYQALLAADVNALKIVEALAIDLNLTAGTYK DVLQTEISYGKFLDVLTKTTGLQPAVVNILNTLQKTANKSNVKIKLEEILNLGPFSDKLIGTGENLKVTAGVFDLINAAA VAGNGGNQLALNLNANLLGLASVKATLAIGEPPVETPSLAVGGQGTIVRTAQTRLAVNVVVDGLQAIAGLKVNLPLYVEV AHAEARLADIRCTGGGQGTVDVEVVPGVAEIALGNVDTSAFANFGKDPRVTKAAIVDSALLAINGSALINATNMTKTKLT FTQSDITQAKIKSVSTKDTVTTLVSSLLKNLNLDIRLLFLNIDLGGLAGIQAALANTLAVVTAPVDQLLYNVLLVLGVKI GEADVRVTDVRCQQPALVQ >Mature_579_residues MRTIPSLLPRFLKDKTGNIAISAGLTAPLFIGILALGVDYGYLTLQKRQLQQTADLAAISAAANATDAEKAVQQYFALNG MDLGVKTDQGLLTAKGLQPFDPLNEFASSKGYAEVIKGHYEPDATVPVGKRFVDNALPTNAIKVNIVEQGQIFFASAFTK PPKVSAVGTASSQKIAAFSVGSRLASLDEGILNSLLGGLLGTTVSLKLMDYQALLAADVNALKIVEALAIDLNLTAGTYK DVLQTEISYGKFLDVLTKTTGLQPAVVNILNTLQKTANKSNVKIKLEEILNLGPFSDKLIGTGENLKVTAGVFDLINAAA VAGNGGNQLALNLNANLLGLASVKATLAIGEPPVETPSLAVGGQGTIVRTAQTRLAVNVVVDGLQAIAGLKVNLPLYVEV AHAEARLADIRCTGGGQGTVDVEVVPGVAEIALGNVDTSAFANFGKDPRVTKAAIVDSALLAINGSALINATNMTKTKLT FTQSDITQAKIKSVSTKDTVTTLVSSLLKNLNLDIRLLFLNIDLGGLAGIQAALANTLAVVTAPVDQLLYNVLLVLGVKI GEADVRVTDVRCQQPALVQ
Specific function: Unknown
COG id: COG4655
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60369; Mature: 60369
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTIPSLLPRFLKDKTGNIAISAGLTAPLFIGILALGVDYGYLTLQKRQLQQTADLAAIS CCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH AAANATDAEKAVQQYFALNGMDLGVKTDQGLLTAKGLQPFDPLNEFASSKGYAEVIKGHY HHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCHHHHHCCCC EPDATVPVGKRFVDNALPTNAIKVNIVEQGQIFFASAFTKPPKVSAVGTASSQKIAAFSV CCCCCCCCCHHHHHCCCCCCCEEEEEEECCCEEEEECCCCCCCCEEECCCCCCEEEEEEH GSRLASLDEGILNSLLGGLLGTTVSLKLMDYQALLAADVNALKIVEALAIDLNLTAGTYK HHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHCCCHHHHHHHHHEEEEEECCCHHH DVLQTEISYGKFLDVLTKTTGLQPAVVNILNTLQKTANKSNVKIKLEEILNLGPFSDKLI HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCC GTGENLKVTAGVFDLINAAAVAGNGGNQLALNLNANLLGLASVKATLAIGEPPVETPSLA CCCCCCEEEHHHHHHHHHHHEECCCCCEEEEEECCCEEEEEEEEEEEEECCCCCCCCCEE VGGQGTIVRTAQTRLAVNVVVDGLQAIAGLKVNLPLYVEVAHAEARLADIRCTGGGQGTV ECCCCCEEEEHHHHEEHHHHHHHHHHHCCEEECCEEEEEEECCCEEEEEEEECCCCCCEE DVEVVPGVAEIALGNVDTSAFANFGKDPRVTKAAIVDSALLAINGSALINATNMTKTKLT EEEECCCHHHHEECCCCHHHHHHCCCCCCHHHHHHHHHHHEEECCCEEEEECCCEEEEEE FTQSDITQAKIKSVSTKDTVTTLVSSLLKNLNLDIRLLFLNIDLGGLAGIQAALANTLAV EEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHE VTAPVDQLLYNVLLVLGVKIGEADVRVTDVRCQQPALVQ EECCHHHHHHHHHHHHCCEECCCCEEEEEEECCCCCCCC >Mature Secondary Structure MRTIPSLLPRFLKDKTGNIAISAGLTAPLFIGILALGVDYGYLTLQKRQLQQTADLAAIS CCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH AAANATDAEKAVQQYFALNGMDLGVKTDQGLLTAKGLQPFDPLNEFASSKGYAEVIKGHY HHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCHHHHHCCCC EPDATVPVGKRFVDNALPTNAIKVNIVEQGQIFFASAFTKPPKVSAVGTASSQKIAAFSV CCCCCCCCCHHHHHCCCCCCCEEEEEEECCCEEEEECCCCCCCCEEECCCCCCEEEEEEH GSRLASLDEGILNSLLGGLLGTTVSLKLMDYQALLAADVNALKIVEALAIDLNLTAGTYK HHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHCCCHHHHHHHHHEEEEEECCCHHH DVLQTEISYGKFLDVLTKTTGLQPAVVNILNTLQKTANKSNVKIKLEEILNLGPFSDKLI HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCC GTGENLKVTAGVFDLINAAAVAGNGGNQLALNLNANLLGLASVKATLAIGEPPVETPSLA CCCCCCEEEHHHHHHHHHHHEECCCCCEEEEEECCCEEEEEEEEEEEEECCCCCCCCCEE VGGQGTIVRTAQTRLAVNVVVDGLQAIAGLKVNLPLYVEVAHAEARLADIRCTGGGQGTV ECCCCCEEEEHHHHEEHHHHHHHHHHHCCEEECCEEEEEEECCCEEEEEEEECCCCCCEE DVEVVPGVAEIALGNVDTSAFANFGKDPRVTKAAIVDSALLAINGSALINATNMTKTKLT EEEECCCHHHHEECCCCHHHHHHCCCCCCHHHHHHHHHHHEEECCCEEEEECCCEEEEEE FTQSDITQAKIKSVSTKDTVTTLVSSLLKNLNLDIRLLFLNIDLGGLAGIQAALANTLAV EEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHE VTAPVDQLLYNVLLVLGVKIGEADVRVTDVRCQQPALVQ EECCHHHHHHHHHHHHCCEECCCCEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA