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The map label for this gene is radC [C]

Identifier: 159184835

GI number: 159184835

Start: 1588783

End: 1589625

Strand: Direct

Name: radC [C]

Synonym: Atu1607

Alternate gene names: 159184835

Gene position: 1588783-1589625 (Clockwise)

Preceding gene: 15888919

Following gene: 15888921

Centisome position: 55.91

GC content: 60.02

Gene sequence:

>843_bases
ATGGCAAAACGCCCTGCCCTGCCTTCCGCCGATCTTTCCCCGACGTCAGGCTTTGAGGCTGGCGAAGGCGATCTGTTCAA
CGGGGCGGATGAGCGCGGCTTTTTCGCCGAACCGCGAAGCGCGCCAAAGAAGGCCGCGCGGGCCGTGACTGCCACAGAAC
AAGAAGCGGATGCCGCTCACTATCACGGCCACCGCGACCGGCTGCGGACACGTTATCGCGATGGTGGTGATGCAGCACTT
GCCGATTATGAATTGCTGGAACTTCTGCTGTTTCGGCTGATCCCGCGACGCGACACCAAACCGATTGCCAAGGCGCTCAT
CGCCCGTTTCGGAACGCTCGGCAGCGTGCTCGGCGCCCCTTTGCCGCTGTTGCAAGAAGTGAAGGGGGTCGGCGAAGCCG
TGGCGCTTGATCTAAAGCTCGTCGCCTCCGTTTCCCAGCGCATGCTGAAAAGCGAAATTCGCAATAAGCAGGTTCTCGGC
TCCTGGTCGTCGGTGATCGACTATTGCCATGCCGCCATGGCCCATGAGACGCGCGAGCAGTTCCGCATCCTCTTCCTCGA
CAAACGCAACGTCCTGATCGCCGACGAGGTGCAGGGTCAGGGAACCGTCGACCATACCCCGGTCTACCCCCGCGAAATCG
TGCGCCGGGCGCTTGAATTATCGTCTACAGCCTTGATTTTAATACATAATCATCCGAGTGGGGACCCGACCCCTTCGCGT
GCAGATATCGAGATGACCAAAACCATCATCGATACGGCAAAGCCGCTCGGCATCACCGTCCACGACCATATCATCATCGG
CAAGGACGGCCACGCCAGCTTCAAGGGCCTTCGGCTGATCTGA

Upstream 100 bases:

>100_bases
GCCGTCGGCGTCACCGCCACCGGCTGTGAAATCTTCACGTTGTCGCCCGGCGGCTTCGATCGCCCGGGCTTGCCGCCGCT
CGCATAAGGCCAGACCGCCT

Downstream 100 bases:

>100_bases
AGCAGACGCGAATGTTTAAGAACGGCTGCAACCCATAAGAGCGGCATCAACAAAAAATTAACACCTATAAATTAGCATTT
CCGAAAATAATAAATCAAGG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MAKRPALPSADLSPTSGFEAGEGDLFNGADERGFFAEPRSAPKKAARAVTATEQEADAAHYHGHRDRLRTRYRDGGDAAL
ADYELLELLLFRLIPRRDTKPIAKALIARFGTLGSVLGAPLPLLQEVKGVGEAVALDLKLVASVSQRMLKSEIRNKQVLG
SWSSVIDYCHAAMAHETREQFRILFLDKRNVLIADEVQGQGTVDHTPVYPREIVRRALELSSTALILIHNHPSGDPTPSR
ADIEMTKTIIDTAKPLGITVHDHIIIGKDGHASFKGLRLI

Sequences:

>Translated_280_residues
MAKRPALPSADLSPTSGFEAGEGDLFNGADERGFFAEPRSAPKKAARAVTATEQEADAAHYHGHRDRLRTRYRDGGDAAL
ADYELLELLLFRLIPRRDTKPIAKALIARFGTLGSVLGAPLPLLQEVKGVGEAVALDLKLVASVSQRMLKSEIRNKQVLG
SWSSVIDYCHAAMAHETREQFRILFLDKRNVLIADEVQGQGTVDHTPVYPREIVRRALELSSTALILIHNHPSGDPTPSR
ADIEMTKTIIDTAKPLGITVHDHIIIGKDGHASFKGLRLI
>Mature_279_residues
AKRPALPSADLSPTSGFEAGEGDLFNGADERGFFAEPRSAPKKAARAVTATEQEADAAHYHGHRDRLRTRYRDGGDAALA
DYELLELLLFRLIPRRDTKPIAKALIARFGTLGSVLGAPLPLLQEVKGVGEAVALDLKLVASVSQRMLKSEIRNKQVLGS
WSSVIDYCHAAMAHETREQFRILFLDKRNVLIADEVQGQGTVDHTPVYPREIVRRALELSSTALILIHNHPSGDPTPSRA
DIEMTKTIIDTAKPLGITVHDHIIIGKDGHASFKGLRLI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=206, Percent_Identity=34.4660194174757, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI2367100, Length=148, Percent_Identity=39.8648648648649, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788997, Length=108, Percent_Identity=43.5185185185185, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788312, Length=136, Percent_Identity=38.9705882352941, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1607_AGRT5 (Q8UEZ6)

Other databases:

- EMBL:   AE007869
- PIR:   A97554
- PIR:   AC2774
- RefSeq:   NP_354601.2
- ProteinModelPortal:   Q8UEZ6
- SMR:   Q8UEZ6
- STRING:   Q8UEZ6
- GeneID:   1133645
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1607
- NMPDR:   fig|176299.4.peg.1706
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- PhylomeDB:   Q8UEZ6
- ProtClustDB:   PRK00024
- BioCyc:   ATUM176299-1:ATU1607-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 30658; Mature: 30527

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRPALPSADLSPTSGFEAGEGDLFNGADERGFFAEPRSAPKKAARAVTATEQEADAAH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YHGHRDRLRTRYRDGGDAALADYELLELLLFRLIPRRDTKPIAKALIARFGTLGSVLGAP
HCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
LPLLQEVKGVGEAVALDLKLVASVSQRMLKSEIRNKQVLGSWSSVIDYCHAAMAHETREQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FRILFLDKRNVLIADEVQGQGTVDHTPVYPREIVRRALELSSTALILIHNHPSGDPTPSR
EEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
ADIEMTKTIIDTAKPLGITVHDHIIIGKDGHASFKGLRLI
CHHHHHHHHHHCCCCCEEEEECEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
AKRPALPSADLSPTSGFEAGEGDLFNGADERGFFAEPRSAPKKAARAVTATEQEADAAH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YHGHRDRLRTRYRDGGDAALADYELLELLLFRLIPRRDTKPIAKALIARFGTLGSVLGAP
HCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
LPLLQEVKGVGEAVALDLKLVASVSQRMLKSEIRNKQVLGSWSSVIDYCHAAMAHETREQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FRILFLDKRNVLIADEVQGQGTVDHTPVYPREIVRRALELSSTALILIHNHPSGDPTPSR
EEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
ADIEMTKTIIDTAKPLGITVHDHIIIGKDGHASFKGLRLI
CHHHHHHHHHHCCCCCEEEEECEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194