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The map label for this gene is rlpA [H]

Identifier: 159184786

GI number: 159184786

Start: 1489940

End: 1490983

Strand: Reverse

Name: rlpA [H]

Synonym: Atu1500

Alternate gene names: 159184786

Gene position: 1490983-1489940 (Counterclockwise)

Preceding gene: 15888827

Following gene: 159184785

Centisome position: 52.47

GC content: 59.29

Gene sequence:

>1044_bases
GTGAAGTGGCTTGCAATTTCCGTGCTTTGCGCTGCGACAGCTTCGTGTTCCACAACCTCTGAGACAAAGCCTAAGCCCAA
GCGCAGCAAGGAATATTTCTCGGAATCGGAATATGGCGTCAAAGCCAGCCCGCGTGTGGCCGATGGGAAGAGCATTCCCA
AGGGCGGCGGACGAGAGTTGGTCGGCAATGCCTATACGGTCAAGGGCCGTCGTTATTTTCCGAAAGAAGAGCCGGGTTAC
AACAAGACCGGTCTCGCCTCCTGGTACGGTTCCGCCTTCCACGGCCGCCTGACGGCGAATGGCGAAGTTTACGATAAAGA
ACATCTTTCCGCCGCACATCCGACATTTCCCCTGCCGAGCTATGCGCGCATCACCAACATGGAAAATGGCTCTTCGGTGC
TGGTACGCGTCAACGATCGCGGACCTTTTCATGAAGGTCGCCTGATCGACGTTTCCAGCAAGACCGCCGATCTTCTCGAT
ATGAAGGCGACAGGTACGGCGAATGTGCGTGTGCAATATGCCGGCCGTGCCCCGCTCGACGGTCACGATATGCCCTATCT
GATGGCCTCCTATATTCCGAAGGGTTCGCGCTCGCCGGGCGTGGCGCCGGAAGGGCAGATTGCAACGGGCGTGATGGTGG
CTTCGGCCTCTCCGAATTTCGTGCCGGCGCCGGCGTCCAACCCGAATTATGGCGGCTCCACGCAGACGGCGCTGGTCGGC
TCCAAGAAGAATGCCGCACTTCAGGCCATGCCGCTGGTGAATGGCGTCCAGCCGGCTTTCGAACAGTTTGTTATCCTGCC
GGAAATCGGCCCATTCCTGGCCGAGCGGCCGGAGGGCAATTTCATGCGTGAGCCGGCAGCGCCCGGCGGAAATTATCTGC
GCGTGCCGACGCCGTCTTCCAAATATTCGGCGGCCTATTCCGAAGAATCAGCTACGGTTTCCAAGTCCGTGCGCGCCTTC
GATAGCGTGCTCGTCGACCGTGGTGCGCTCAACGAGCAATCGATACTCGCCCATGTGAAGCGTCAGCAGGCGAAGTCTCG
CTGA

Upstream 100 bases:

>100_bases
GAGGGTGCGGTTCTCCAAGCCAGAAGCATGGGCCAATAAGCGTGGGGCAGACGATTTGAAATCTACGGTCAAAAAACTCG
GCATCAGCACCAGATCGGGT

Downstream 100 bases:

>100_bases
CGAATTGAGAGTAAGGCTGCCTTTCGCTTTCATGGCGTGCAGCCGGTTGCAGCACGCAGGACTGGGCGGTTTCATGCGCA
AGGCCATACATCGCTCTTAC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MKWLAISVLCAATASCSTTSETKPKPKRSKEYFSESEYGVKASPRVADGKSIPKGGGRELVGNAYTVKGRRYFPKEEPGY
NKTGLASWYGSAFHGRLTANGEVYDKEHLSAAHPTFPLPSYARITNMENGSSVLVRVNDRGPFHEGRLIDVSSKTADLLD
MKATGTANVRVQYAGRAPLDGHDMPYLMASYIPKGSRSPGVAPEGQIATGVMVASASPNFVPAPASNPNYGGSTQTALVG
SKKNAALQAMPLVNGVQPAFEQFVILPEIGPFLAERPEGNFMREPAAPGGNYLRVPTPSSKYSAAYSEESATVSKSVRAF
DSVLVDRGALNEQSILAHVKRQQAKSR

Sequences:

>Translated_347_residues
MKWLAISVLCAATASCSTTSETKPKPKRSKEYFSESEYGVKASPRVADGKSIPKGGGRELVGNAYTVKGRRYFPKEEPGY
NKTGLASWYGSAFHGRLTANGEVYDKEHLSAAHPTFPLPSYARITNMENGSSVLVRVNDRGPFHEGRLIDVSSKTADLLD
MKATGTANVRVQYAGRAPLDGHDMPYLMASYIPKGSRSPGVAPEGQIATGVMVASASPNFVPAPASNPNYGGSTQTALVG
SKKNAALQAMPLVNGVQPAFEQFVILPEIGPFLAERPEGNFMREPAAPGGNYLRVPTPSSKYSAAYSEESATVSKSVRAF
DSVLVDRGALNEQSILAHVKRQQAKSR
>Mature_347_residues
MKWLAISVLCAATASCSTTSETKPKPKRSKEYFSESEYGVKASPRVADGKSIPKGGGRELVGNAYTVKGRRYFPKEEPGY
NKTGLASWYGSAFHGRLTANGEVYDKEHLSAAHPTFPLPSYARITNMENGSSVLVRVNDRGPFHEGRLIDVSSKTADLLD
MKATGTANVRVQYAGRAPLDGHDMPYLMASYIPKGSRSPGVAPEGQIATGVMVASASPNFVPAPASNPNYGGSTQTALVG
SKKNAALQAMPLVNGVQPAFEQFVILPEIGPFLAERPEGNFMREPAAPGGNYLRVPTPSSKYSAAYSEESATVSKSVRAF
DSVLVDRGALNEQSILAHVKRQQAKSR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=161, Percent_Identity=34.1614906832298, Blast_Score=98, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 37132; Mature: 37132

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWLAISVLCAATASCSTTSETKPKPKRSKEYFSESEYGVKASPRVADGKSIPKGGGREL
CCEEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
VGNAYTVKGRRYFPKEEPGYNKTGLASWYGSAFHGRLTANGEVYDKEHLSAAHPTFPLPS
CCCEEEECCCEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCEECHHHCCCCCCCCCCCC
YARITNMENGSSVLVRVNDRGPFHEGRLIDVSSKTADLLDMKATGTANVRVQYAGRAPLD
HHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCHHEEEECCCCCEEEEEECCCCCCC
GHDMPYLMASYIPKGSRSPGVAPEGQIATGVMVASASPNFVPAPASNPNYGGSTQTALVG
CCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCEEEEC
SKKNAALQAMPLVNGVQPAFEQFVILPEIGPFLAERPEGNFMREPAAPGGNYLRVPTPSS
CCCCCEEEEECCCCCCCHHHHHEEECCCCCHHHHCCCCCCCEECCCCCCCCEEECCCCCC
KYSAAYSEESATVSKSVRAFDSVLVDRGALNEQSILAHVKRQQAKSR
CCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKWLAISVLCAATASCSTTSETKPKPKRSKEYFSESEYGVKASPRVADGKSIPKGGGREL
CCEEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
VGNAYTVKGRRYFPKEEPGYNKTGLASWYGSAFHGRLTANGEVYDKEHLSAAHPTFPLPS
CCCEEEECCCEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCEECHHHCCCCCCCCCCCC
YARITNMENGSSVLVRVNDRGPFHEGRLIDVSSKTADLLDMKATGTANVRVQYAGRAPLD
HHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCHHEEEECCCCCEEEEEECCCCCCC
GHDMPYLMASYIPKGSRSPGVAPEGQIATGVMVASASPNFVPAPASNPNYGGSTQTALVG
CCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCEEEEC
SKKNAALQAMPLVNGVQPAFEQFVILPEIGPFLAERPEGNFMREPAAPGGNYLRVPTPSS
CCCCCEEEEECCCCCCCHHHHHEEECCCCCHHHHCCCCCCCEECCCCCCCCEEECCCCCC
KYSAAYSEESATVSKSVRAFDSVLVDRGALNEQSILAHVKRQQAKSR
CCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]