Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159184692
Identifier: 159184692
GI number: 159184692
Start: 1272959
End: 1274626
Strand: Direct
Name: 159184692
Synonym: Atu1285
Alternate gene names: NA
Gene position: 1272959-1274626 (Clockwise)
Preceding gene: 15888613
Following gene: 159184693
Centisome position: 44.8
GC content: 61.93
Gene sequence:
>1668_bases ATGGCTAAACAGGACGAACTGGTCTTTGTGCCGCTTGGCGGCGTTGGTGAAATCGGCATGAATCTGGCGCTTTACGGTTA TGGGCCGGAGAGCAAGCGCCAATGGATCATGGTGGATTGCGGCGTGACTTTCGCCGGCCCGGACCTGCCGGGCGTCGATC TTGTGCTGCCTGACATCAGCTACATCGCCGAGCAGAAAAAGAACCTCAAGGGCATCATCATCACCCACGCCCATGAGGAC CATTATGGTGCAATGAACGATCTCTGGCCGGGTCTCAATGTGCCGGTCTATGCCTCGCCTTTCACCGCCGGCATGCTGGA AGCCAAGCGCGCCTATGAGGGTACCCGTGCCGAAATCCCGGTGACGATTTTCAAGGCCGGCGACCGCATCAATGTCGGGC CGTTCGAAATCGAGGCTGTTGGCGTCAACCACTCCATTCCGGAGCCGATGTCGCTGATCATTCGCACGCCGCTTGGCAAT GTCATCCACACCGGCGACTGGAAGATCGACGAGGCCCCGTCGCTTGGGCCGTTGACGGATGAAGCCCGTTTCCGCGCGAT CGGTGAAGAGGGCGTGCTGGCGCTGATGTGCGACAGCACCAACGCGCTGCGCGACGGCGTGTCGCCCTCCGAGCATGAGG TTTCCGAAGGCCTGCGCCAGATCATCGAAAGTGCCGAAGGCCGCGTGGCCGTCACCACTTTCTCCTCCAATGTCGGGCGC ATCCGCTCGATTGCGCAAGCGGCGGAGGCGGCCGGCCGCGAGGTATTGCTGCTCGGCTCTTCGCTGAAGCGTGTCGTGAA TGTCTCGCAGGATCTTGGCATCATGGAAGGCATCAAGCCGTTCCTCGCCGAAGACGAATATGGTTATATTCCGCGCGACC GTGTGGTGGTGATCCTGACCGGTTCGCAGGGCGAACCGCGCGCAGCGCTCGCCAAGCTTTCCCGCGACGAGATGCGCAAT GTGGCGCTCGCTTCGGGAGATACCGTCGTCTTTTCCTCACGCGCCATTCCCGGCAACGAAAAGGCGATCATCGAGATCAA GAACGGCCTGATCGAACAGGGCGTTCACATCGTGACCGACAATGAAGCTCTGGTGCATGTCTCGGGCCATCCGCGCCGCA ACGAGCTTTTGCGGATGTATGAGTGGACGAAGCCGCAGATCCTGGTGCCTGTCCACGGCGAGGCGGCGCATCTGGTGGCG CAGAAGGAACTGGCCGAGCAGGCCGGCATCTCGCAGGTGCCGAAGGTGCGCAACGGCAATGTTCTGCGCCTGGCACCCGG CCCGGCGGAAGTCATCAACGATGTGCCGCATGGACGCGTCTTCAAGGACGGTAATCTCGTCGGCGATATGGACGAGATGG GCATCAGCAATCGCCGCAAACTGTCCTTCGCCGGCCATGTCGCTGTCAACGTCGTGCTGGACAGCCGTTACGACTTCCTC GGCGATCCCGATGTCGTGCCGTTCGGCCTGCCGGAATTTGATGACGAGGACGAGGCGATGGAGGACACGCTTTATGACGC CGTACTCGGCGCCGTCGAGAGCATTCCGCGCGCCCGCCGCAAGGACCTGGCACTGCTGCGCGAATCGGTGCGCCGCGCCG TGCGCGCCGCTGCCAACCAGAGCTGGGGCAAGAAGCCGATCGTCACGGTTTTCGTAACGAAGGTCTGA
Upstream 100 bases:
>100_bases CGGTCGATCAGATGGTTCAACAGGTCCGATGCTGGATAAAGGTGGCGGGCGCGGCAAATTGTCGTCGCCTGAGCGCTTTC GTGAATGGACAAGAAAAACA
Downstream 100 bases:
>100_bases TCCGGGAGGTGAGGGTGGGGCTTACGAATCCTCCGTCGCCGCTTCGTTGAATTAGGGGGCCGTGCCGAAAAGCGCGGCCC TCTTTGTTTCTTTGTGGCTT
Product: metal dependent hydrolase
Products: NA
Alternate protein names: RNase J [H]
Number of amino acids: Translated: 555; Mature: 554
Protein sequence:
>555_residues MAKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDISYIAEQKKNLKGIIITHAHED HYGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIPVTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLIIRTPLGN VIHTGDWKIDEAPSLGPLTDEARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGR IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILTGSQGEPRAALAKLSRDEMRN VALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTDNEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVA QKELAEQAGISQVPKVRNGNVLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQSWGKKPIVTVFVTKV
Sequences:
>Translated_555_residues MAKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDISYIAEQKKNLKGIIITHAHED HYGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIPVTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLIIRTPLGN VIHTGDWKIDEAPSLGPLTDEARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGR IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILTGSQGEPRAALAKLSRDEMRN VALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTDNEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVA QKELAEQAGISQVPKVRNGNVLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQSWGKKPIVTVFVTKV >Mature_554_residues AKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDISYIAEQKKNLKGIIITHAHEDH YGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIPVTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLIIRTPLGNV IHTGDWKIDEAPSLGPLTDEARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGRI RSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILTGSQGEPRAALAKLSRDEMRNV ALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTDNEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVAQ KELAEQAGISQVPKVRNGNVLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFLG DPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQSWGKKPIVTVFVTKV
Specific function: Unknown
COG id: COG0595
COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR011108 [H]
Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]
EC number: NA
Molecular weight: Translated: 60259; Mature: 60127
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDIS CCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCCEEECCCHH YIAEQKKNLKGIIITHAHEDHYGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIP HHHHHHCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCC VTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLIIRTPLGNVIHTGDWKIDEAPSLGPLTD EEEEECCCCCCCCCEEEEEEECCCCCCCCHHHEEECCCCCEEECCCCCCCCCCCCCCCCC EARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGR CHHHEEECCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHH IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILT HHHHHHHHHHCCCEEEEECHHHHHHHHCHHHCCHHHCCHHHHCCCCCCCCCCCCEEEEEE GSQGEPRAALAKLSRDEMRNVALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTD CCCCCCHHHHHHHHHHHHHHEEEECCCEEEEECCCCCCCCEEEEEECCCHHHCCCEEEEC NEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVAQKELAEQAGISQVPKVRNGN CCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC VLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL EEEECCCHHHHHCCCCCCCEEECCCEECCHHHCCCCCCEEEEEECEEEEEEEEECCCCCC GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQ CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SWGKKPIVTVFVTKV CCCCCCEEEEEEEEC >Mature Secondary Structure AKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDIS CCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCCEEECCCHH YIAEQKKNLKGIIITHAHEDHYGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIP HHHHHHCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCC VTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLIIRTPLGNVIHTGDWKIDEAPSLGPLTD EEEEECCCCCCCCCEEEEEEECCCCCCCCHHHEEECCCCCEEECCCCCCCCCCCCCCCCC EARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGR CHHHEEECCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHH IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILT HHHHHHHHHHCCCEEEEECHHHHHHHHCHHHCCHHHCCHHHHCCCCCCCCCCCCEEEEEE GSQGEPRAALAKLSRDEMRNVALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTD CCCCCCHHHHHHHHHHHHHHEEEECCCEEEEECCCCCCCCEEEEEECCCHHHCCCEEEEC NEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVAQKELAEQAGISQVPKVRNGN CCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC VLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL EEEECCCHHHHHCCCCCCCEEECCCEECCHHHCCCCCCEEEEEECEEEEEEEEECCCCCC GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQ CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SWGKKPIVTVFVTKV CCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]