Click here to switch to the map view.

The map label for this gene is 159184692

Identifier: 159184692

GI number: 159184692

Start: 1272959

End: 1274626

Strand: Direct

Name: 159184692

Synonym: Atu1285

Alternate gene names: NA

Gene position: 1272959-1274626 (Clockwise)

Preceding gene: 15888613

Following gene: 159184693

Centisome position: 44.8

GC content: 61.93

Gene sequence:

>1668_bases
ATGGCTAAACAGGACGAACTGGTCTTTGTGCCGCTTGGCGGCGTTGGTGAAATCGGCATGAATCTGGCGCTTTACGGTTA
TGGGCCGGAGAGCAAGCGCCAATGGATCATGGTGGATTGCGGCGTGACTTTCGCCGGCCCGGACCTGCCGGGCGTCGATC
TTGTGCTGCCTGACATCAGCTACATCGCCGAGCAGAAAAAGAACCTCAAGGGCATCATCATCACCCACGCCCATGAGGAC
CATTATGGTGCAATGAACGATCTCTGGCCGGGTCTCAATGTGCCGGTCTATGCCTCGCCTTTCACCGCCGGCATGCTGGA
AGCCAAGCGCGCCTATGAGGGTACCCGTGCCGAAATCCCGGTGACGATTTTCAAGGCCGGCGACCGCATCAATGTCGGGC
CGTTCGAAATCGAGGCTGTTGGCGTCAACCACTCCATTCCGGAGCCGATGTCGCTGATCATTCGCACGCCGCTTGGCAAT
GTCATCCACACCGGCGACTGGAAGATCGACGAGGCCCCGTCGCTTGGGCCGTTGACGGATGAAGCCCGTTTCCGCGCGAT
CGGTGAAGAGGGCGTGCTGGCGCTGATGTGCGACAGCACCAACGCGCTGCGCGACGGCGTGTCGCCCTCCGAGCATGAGG
TTTCCGAAGGCCTGCGCCAGATCATCGAAAGTGCCGAAGGCCGCGTGGCCGTCACCACTTTCTCCTCCAATGTCGGGCGC
ATCCGCTCGATTGCGCAAGCGGCGGAGGCGGCCGGCCGCGAGGTATTGCTGCTCGGCTCTTCGCTGAAGCGTGTCGTGAA
TGTCTCGCAGGATCTTGGCATCATGGAAGGCATCAAGCCGTTCCTCGCCGAAGACGAATATGGTTATATTCCGCGCGACC
GTGTGGTGGTGATCCTGACCGGTTCGCAGGGCGAACCGCGCGCAGCGCTCGCCAAGCTTTCCCGCGACGAGATGCGCAAT
GTGGCGCTCGCTTCGGGAGATACCGTCGTCTTTTCCTCACGCGCCATTCCCGGCAACGAAAAGGCGATCATCGAGATCAA
GAACGGCCTGATCGAACAGGGCGTTCACATCGTGACCGACAATGAAGCTCTGGTGCATGTCTCGGGCCATCCGCGCCGCA
ACGAGCTTTTGCGGATGTATGAGTGGACGAAGCCGCAGATCCTGGTGCCTGTCCACGGCGAGGCGGCGCATCTGGTGGCG
CAGAAGGAACTGGCCGAGCAGGCCGGCATCTCGCAGGTGCCGAAGGTGCGCAACGGCAATGTTCTGCGCCTGGCACCCGG
CCCGGCGGAAGTCATCAACGATGTGCCGCATGGACGCGTCTTCAAGGACGGTAATCTCGTCGGCGATATGGACGAGATGG
GCATCAGCAATCGCCGCAAACTGTCCTTCGCCGGCCATGTCGCTGTCAACGTCGTGCTGGACAGCCGTTACGACTTCCTC
GGCGATCCCGATGTCGTGCCGTTCGGCCTGCCGGAATTTGATGACGAGGACGAGGCGATGGAGGACACGCTTTATGACGC
CGTACTCGGCGCCGTCGAGAGCATTCCGCGCGCCCGCCGCAAGGACCTGGCACTGCTGCGCGAATCGGTGCGCCGCGCCG
TGCGCGCCGCTGCCAACCAGAGCTGGGGCAAGAAGCCGATCGTCACGGTTTTCGTAACGAAGGTCTGA

Upstream 100 bases:

>100_bases
CGGTCGATCAGATGGTTCAACAGGTCCGATGCTGGATAAAGGTGGCGGGCGCGGCAAATTGTCGTCGCCTGAGCGCTTTC
GTGAATGGACAAGAAAAACA

Downstream 100 bases:

>100_bases
TCCGGGAGGTGAGGGTGGGGCTTACGAATCCTCCGTCGCCGCTTCGTTGAATTAGGGGGCCGTGCCGAAAAGCGCGGCCC
TCTTTGTTTCTTTGTGGCTT

Product: metal dependent hydrolase

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 555; Mature: 554

Protein sequence:

>555_residues
MAKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDISYIAEQKKNLKGIIITHAHED
HYGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIPVTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLIIRTPLGN
VIHTGDWKIDEAPSLGPLTDEARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGR
IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILTGSQGEPRAALAKLSRDEMRN
VALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTDNEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVA
QKELAEQAGISQVPKVRNGNVLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL
GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQSWGKKPIVTVFVTKV

Sequences:

>Translated_555_residues
MAKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDISYIAEQKKNLKGIIITHAHED
HYGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIPVTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLIIRTPLGN
VIHTGDWKIDEAPSLGPLTDEARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGR
IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILTGSQGEPRAALAKLSRDEMRN
VALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTDNEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVA
QKELAEQAGISQVPKVRNGNVLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL
GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQSWGKKPIVTVFVTKV
>Mature_554_residues
AKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDISYIAEQKKNLKGIIITHAHEDH
YGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIPVTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLIIRTPLGNV
IHTGDWKIDEAPSLGPLTDEARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGRI
RSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILTGSQGEPRAALAKLSRDEMRNV
ALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTDNEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVAQ
KELAEQAGISQVPKVRNGNVLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFLG
DPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQSWGKKPIVTVFVTKV

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 60259; Mature: 60127

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDIS
CCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCCEEECCCHH
YIAEQKKNLKGIIITHAHEDHYGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIP
HHHHHHCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCC
VTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLIIRTPLGNVIHTGDWKIDEAPSLGPLTD
EEEEECCCCCCCCCEEEEEEECCCCCCCCHHHEEECCCCCEEECCCCCCCCCCCCCCCCC
EARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGR
CHHHEEECCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILT
HHHHHHHHHHCCCEEEEECHHHHHHHHCHHHCCHHHCCHHHHCCCCCCCCCCCCEEEEEE
GSQGEPRAALAKLSRDEMRNVALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTD
CCCCCCHHHHHHHHHHHHHHEEEECCCEEEEECCCCCCCCEEEEEECCCHHHCCCEEEEC
NEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVAQKELAEQAGISQVPKVRNGN
CCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC
VLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL
EEEECCCHHHHHCCCCCCCEEECCCEECCHHHCCCCCCEEEEEECEEEEEEEEECCCCCC
GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SWGKKPIVTVFVTKV
CCCCCCEEEEEEEEC
>Mature Secondary Structure 
AKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDIS
CCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCEEECCCCCCCCEEECCCHH
YIAEQKKNLKGIIITHAHEDHYGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIP
HHHHHHCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCC
VTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLIIRTPLGNVIHTGDWKIDEAPSLGPLTD
EEEEECCCCCCCCCEEEEEEECCCCCCCCHHHEEECCCCCEEECCCCCCCCCCCCCCCCC
EARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGR
CHHHEEECCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILT
HHHHHHHHHHCCCEEEEECHHHHHHHHCHHHCCHHHCCHHHHCCCCCCCCCCCCEEEEEE
GSQGEPRAALAKLSRDEMRNVALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTD
CCCCCCHHHHHHHHHHHHHHEEEECCCEEEEECCCCCCCCEEEEEECCCHHHCCCEEEEC
NEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVAQKELAEQAGISQVPKVRNGN
CCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC
VLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL
EEEECCCHHHHHCCCCCCCEEECCCEECCHHHCCCCCCEEEEEECEEEEEEEEECCCCCC
GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SWGKKPIVTVFVTKV
CCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]