Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is wcaJ [H]
Identifier: 159184679
GI number: 159184679
Start: 1224313
End: 1225866
Strand: Reverse
Name: wcaJ [H]
Synonym: Atu1236
Alternate gene names: 159184679
Gene position: 1225866-1224313 (Counterclockwise)
Preceding gene: 15888568
Following gene: 15888566
Centisome position: 43.14
GC content: 58.69
Gene sequence:
>1554_bases ATGACCAAGACTGACAAGGACAGACTGCAATTCGATCTGGCGTCATTGCGCAAGAAACTCTCCGACTACGAAGCCGGGGG TGCTGCGGCATCCGAAACCATCGTTCTCAATCCGCTTGCACGGCAAATTGCCAACCAGCTTCGCGCCGGTAACCATTCAC CTAACATGGTGATCGGGCAATTGCGGCTTCTCGAATTCACGATGCTCGTGATCATAGCTGCCGTCGTCAACGGTATTGCA GCCGATCGCGGCCTTGAAACCTTCCTGAAGGTTTTCAGCGGCGGCGTGCTGGGTGCGGCACTCTGCGTCTTCCTGCTGCA GGCGGGTGATTGCTATCAGCTTCCCACGTTGCGCACGCCGCTAAAAATGTTTGCCCGCATTCAGGGCGCCGTCTGCCTTT CCTTCGTGGGAATTGCCTGTTTCCTTCTCGTCTTCTTCCCGGAAACGCTGCAGTCCTGGCAGGCCTTCGCCATCTGGTAT GCAACGGGCGCGATCGCGATTTTCGCCGGTCGGTTGATCCTTGGCTTTGCCATCCGCCACTGGGGCCGCAACGGCGTGAT GGAACGCCGCGCCGTCATCGTCGGCGGCGGCGATGCCGCGAGAGACCTTATCCGTTCGCTGGAGCAGCAGTCCGACAACG ACATCCGCATCTGCGGTATTTTCGACGACCGGAAAAGCGAGCGGTCTCCCGAAGTTGTCGCCGGTTATCCCAAGCTCGGC ACCTTTGCGGAACTGGTGGAATTCGCCCGCCTGACGAAGCTCGACATGCTGATCATCGCCCTGCCGCTCAGCGCCGAGGC GCGCATTCTCCAGCTTCTGCGCAAGCTGTGGGTTTTGCCGGTCGATATCCGCATTGCCGCCCATGCCAATAAATTGCGCT TCCGCCCGCGCGCCTATTCGCATGTCGGCAAGGTGCCTATGCTCGATGTGTTCGACAAGCCGATCCGCGACTGGGATTCG GTGGCGAAACGGCTATTCGACATCACCTTCAGCCTCATGGGGATCGCCCTTTTCTGGCCGGTGATGCTCGCTGCGGGAAT TGCCGTGAAAGCGACCTCCAAAGGTCCGGTCCTCTTCAAGCAGAAGCGCCACGGCTTCAACAATGAGACCATCAACGTCT GGAAGTTCCGTTCCATGTATACGGAGCTCAGCGATCCCACGGCGAAAAAAGCCGTCACGAAGAACGATCCGCGCGTCACA CCGGTTGGCCGCTTCCTGCGCAAATCCTCGATGGACGAACTGCCGCAGCTTTTCAACGTTCTCTACGGCGACCTCTCTTT GGTCGGCCCGCGCCCGCACGCCGTTCACGCGCAGACGGGCGATCTGAAATATACCGAGGTGGTGGAACATTATTTCGCCC GCCACAAGGTCAAGCCCGGGGTGACCGGCTGGGCGCAGATCAATGGCTGGCGCGGCGAGATCGACCACGGCGACAAGATC AAGTTCCGAACCGAATATGATCTCTATTACATCGAGAACTGGTCGCTGTTTCTCGATCTGAAGATCCTGTTCCTCACGCC GATCCGGCTGCTGAAATCGGAAAATGCCTATTGA
Upstream 100 bases:
>100_bases ACGTGACTGGGAGGCTCTACCACTTAGAAGTTGCGTATCGTCCGGTCGAAAATCGAATGCGAGTTTCGGGCCGATGCGCT AGAGGGTGCGGACCAAAGCA
Downstream 100 bases:
>100_bases CCCATACCGGTTACCAGCACACGGCGGATTTTGACGCACCCTTAGCCACCATGCGGCTCATCGGCGCGTTCTTCATCGCA TTTGGGGTGTTTCTCTCCGG
Product: polysaccharide biosynthesis glycosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 517; Mature: 516
Protein sequence:
>517_residues MTKTDKDRLQFDLASLRKKLSDYEAGGAAASETIVLNPLARQIANQLRAGNHSPNMVIGQLRLLEFTMLVIIAAVVNGIA ADRGLETFLKVFSGGVLGAALCVFLLQAGDCYQLPTLRTPLKMFARIQGAVCLSFVGIACFLLVFFPETLQSWQAFAIWY ATGAIAIFAGRLILGFAIRHWGRNGVMERRAVIVGGGDAARDLIRSLEQQSDNDIRICGIFDDRKSERSPEVVAGYPKLG TFAELVEFARLTKLDMLIIALPLSAEARILQLLRKLWVLPVDIRIAAHANKLRFRPRAYSHVGKVPMLDVFDKPIRDWDS VAKRLFDITFSLMGIALFWPVMLAAGIAVKATSKGPVLFKQKRHGFNNETINVWKFRSMYTELSDPTAKKAVTKNDPRVT PVGRFLRKSSMDELPQLFNVLYGDLSLVGPRPHAVHAQTGDLKYTEVVEHYFARHKVKPGVTGWAQINGWRGEIDHGDKI KFRTEYDLYYIENWSLFLDLKILFLTPIRLLKSENAY
Sequences:
>Translated_517_residues MTKTDKDRLQFDLASLRKKLSDYEAGGAAASETIVLNPLARQIANQLRAGNHSPNMVIGQLRLLEFTMLVIIAAVVNGIA ADRGLETFLKVFSGGVLGAALCVFLLQAGDCYQLPTLRTPLKMFARIQGAVCLSFVGIACFLLVFFPETLQSWQAFAIWY ATGAIAIFAGRLILGFAIRHWGRNGVMERRAVIVGGGDAARDLIRSLEQQSDNDIRICGIFDDRKSERSPEVVAGYPKLG TFAELVEFARLTKLDMLIIALPLSAEARILQLLRKLWVLPVDIRIAAHANKLRFRPRAYSHVGKVPMLDVFDKPIRDWDS VAKRLFDITFSLMGIALFWPVMLAAGIAVKATSKGPVLFKQKRHGFNNETINVWKFRSMYTELSDPTAKKAVTKNDPRVT PVGRFLRKSSMDELPQLFNVLYGDLSLVGPRPHAVHAQTGDLKYTEVVEHYFARHKVKPGVTGWAQINGWRGEIDHGDKI KFRTEYDLYYIENWSLFLDLKILFLTPIRLLKSENAY >Mature_516_residues TKTDKDRLQFDLASLRKKLSDYEAGGAAASETIVLNPLARQIANQLRAGNHSPNMVIGQLRLLEFTMLVIIAAVVNGIAA DRGLETFLKVFSGGVLGAALCVFLLQAGDCYQLPTLRTPLKMFARIQGAVCLSFVGIACFLLVFFPETLQSWQAFAIWYA TGAIAIFAGRLILGFAIRHWGRNGVMERRAVIVGGGDAARDLIRSLEQQSDNDIRICGIFDDRKSERSPEVVAGYPKLGT FAELVEFARLTKLDMLIIALPLSAEARILQLLRKLWVLPVDIRIAAHANKLRFRPRAYSHVGKVPMLDVFDKPIRDWDSV AKRLFDITFSLMGIALFWPVMLAAGIAVKATSKGPVLFKQKRHGFNNETINVWKFRSMYTELSDPTAKKAVTKNDPRVTP VGRFLRKSSMDELPQLFNVLYGDLSLVGPRPHAVHAQTGDLKYTEVVEHYFARHKVKPGVTGWAQINGWRGEIDHGDKIK FRTEYDLYYIENWSLFLDLKILFLTPIRLLKSENAY
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: COG2148
COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial sugar transferase family [H]
Homologues:
Organism=Escherichia coli, GI1788360, Length=373, Percent_Identity=37.8016085790885, Blast_Score=240, Evalue=2e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003362 - InterPro: IPR017475 - InterPro: IPR017473 [H]
Pfam domain/function: PF02397 Bac_transf [H]
EC number: NA
Molecular weight: Translated: 58027; Mature: 57895
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTDKDRLQFDLASLRKKLSDYEAGGAAASETIVLNPLARQIANQLRAGNHSPNMVIGQ CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCHHHHH LRLLEFTMLVIIAAVVNGIAADRGLETFLKVFSGGVLGAALCVFLLQAGDCYQLPTLRTP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHH LKMFARIQGAVCLSFVGIACFLLVFFPETLQSWQAFAIWYATGAIAIFAGRLILGFAIRH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WGRNGVMERRAVIVGGGDAARDLIRSLEQQSDNDIRICGIFDDRKSERSPEVVAGYPKLG HCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEECCCCCC TFAELVEFARLTKLDMLIIALPLSAEARILQLLRKLWVLPVDIRIAAHANKLRFRPRAYS HHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHCCCCHHHH HVGKVPMLDVFDKPIRDWDSVAKRLFDITFSLMGIALFWPVMLAAGIAVKATSKGPVLFK HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEE QKRHGFNNETINVWKFRSMYTELSDPTAKKAVTKNDPRVTPVGRFLRKSSMDELPQLFNV HHHCCCCCCCEEEEEHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH LYGDLSLVGPRPHAVHAQTGDLKYTEVVEHYFARHKVKPGVTGWAQINGWRGEIDHGDKI HHCCCEEECCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEE KFRTEYDLYYIENWSLFLDLKILFLTPIRLLKSENAY EEEEEEEEEEEECCEEEEEHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TKTDKDRLQFDLASLRKKLSDYEAGGAAASETIVLNPLARQIANQLRAGNHSPNMVIGQ CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCHHHHH LRLLEFTMLVIIAAVVNGIAADRGLETFLKVFSGGVLGAALCVFLLQAGDCYQLPTLRTP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHH LKMFARIQGAVCLSFVGIACFLLVFFPETLQSWQAFAIWYATGAIAIFAGRLILGFAIRH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WGRNGVMERRAVIVGGGDAARDLIRSLEQQSDNDIRICGIFDDRKSERSPEVVAGYPKLG HCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEECCCCCC TFAELVEFARLTKLDMLIIALPLSAEARILQLLRKLWVLPVDIRIAAHANKLRFRPRAYS HHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCHHCCCCHHHH HVGKVPMLDVFDKPIRDWDSVAKRLFDITFSLMGIALFWPVMLAAGIAVKATSKGPVLFK HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEE QKRHGFNNETINVWKFRSMYTELSDPTAKKAVTKNDPRVTPVGRFLRKSSMDELPQLFNV HHHCCCCCCCEEEEEHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH LYGDLSLVGPRPHAVHAQTGDLKYTEVVEHYFARHKVKPGVTGWAQINGWRGEIDHGDKI HHCCCEEECCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEE KFRTEYDLYYIENWSLFLDLKILFLTPIRLLKSENAY EEEEEEEEEEEECCEEEEEHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8759852; 9097040; 9278503 [H]