Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159184651
Identifier: 159184651
GI number: 159184651
Start: 1170831
End: 1171394
Strand: Direct
Name: 159184651
Synonym: Atu1177
Alternate gene names: NA
Gene position: 1170831-1171394 (Clockwise)
Preceding gene: 159184650
Following gene: 15888516
Centisome position: 41.2
GC content: 56.91
Gene sequence:
>564_bases ATGAACGCGCGACACGCCGCAAATGACGACCTGCCTTTTTCCTATCCCGTCAAGGTAGGCCATATTTCCGCCAATCCGGT CAGGATTGGTCTCGAAGCCAGTGCCGAGGAACTGAAGGCGCTGGCGAAATTCTGGGATGTGGTCTCCGTCGAATATCTGA AGGCGGAGCTGCAGGTCACCCGCTGGAAGAGGGATGGCATCAAGATCAAGGGCGAGGTGCATGCGGCGGTCACTCAATCC TGCGTCGTCACGCTGGAACCGGTGTCCAGCAAGATCGACGAGACGGTCGAGCATATTTTCGTGCCGGAAGGATCGAAGCT GGCGCGGATGGTGACGAATGAAGAAGGCGAGATCGTACTCGACCCTGATGGCCCTGATATTCCCGATCAGTTCACCGGCG ACAGCATCGATGTCGGTGCCGTGGTTGCCGAATTTGCGGCCCTTGCCATCGACCCTTATCCGCGCAAGCCGGACGTGGAA TTTGCCGGAAAGGCTGAAAAACAGACCGACGATGACAAGCCGCCATCGCCCTTTGCCGTGTTGAAAGATTGGAAAAAAGA CTGA
Upstream 100 bases:
>100_bases GCTGGATGATGGAAACATCCGATGCCCTTGCCGCCCAGTCCGAAGAGACGATAGCAACCGGAAGCCTGACGCTGCCCCTG CCTATATGATGAGGTTCACG
Downstream 100 bases:
>100_bases ATGGCCCAGCCGGGCTGAAATAATTTTATTGTAACAAGAGCCGGAAAAGGTATTTTCGCGCGAAATCCGCTTGATTGGCG GCAAGAAGGATAAGGGACGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 187; Mature: 187
Protein sequence:
>187_residues MNARHAANDDLPFSYPVKVGHISANPVRIGLEASAEELKALAKFWDVVSVEYLKAELQVTRWKRDGIKIKGEVHAAVTQS CVVTLEPVSSKIDETVEHIFVPEGSKLARMVTNEEGEIVLDPDGPDIPDQFTGDSIDVGAVVAEFAALAIDPYPRKPDVE FAGKAEKQTDDDKPPSPFAVLKDWKKD
Sequences:
>Translated_187_residues MNARHAANDDLPFSYPVKVGHISANPVRIGLEASAEELKALAKFWDVVSVEYLKAELQVTRWKRDGIKIKGEVHAAVTQS CVVTLEPVSSKIDETVEHIFVPEGSKLARMVTNEEGEIVLDPDGPDIPDQFTGDSIDVGAVVAEFAALAIDPYPRKPDVE FAGKAEKQTDDDKPPSPFAVLKDWKKD >Mature_187_residues MNARHAANDDLPFSYPVKVGHISANPVRIGLEASAEELKALAKFWDVVSVEYLKAELQVTRWKRDGIKIKGEVHAAVTQS CVVTLEPVSSKIDETVEHIFVPEGSKLARMVTNEEGEIVLDPDGPDIPDQFTGDSIDVGAVVAEFAALAIDPYPRKPDVE FAGKAEKQTDDDKPPSPFAVLKDWKKD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20493; Mature: 20493
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNARHAANDDLPFSYPVKVGHISANPVRIGLEASAEELKALAKFWDVVSVEYLKAELQVT CCCCCCCCCCCCEECCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHE RWKRDGIKIKGEVHAAVTQSCVVTLEPVSSKIDETVEHIFVPEGSKLARMVTNEEGEIVL EECCCCEEEEEEEHEEEHHEEEEEECCHHHHHHHHHHEEECCCCCHHHHHHCCCCCCEEE DPDGPDIPDQFTGDSIDVGAVVAEFAALAIDPYPRKPDVEFAGKAEKQTDDDKPPSPFAV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH LKDWKKD HHCCCCC >Mature Secondary Structure MNARHAANDDLPFSYPVKVGHISANPVRIGLEASAEELKALAKFWDVVSVEYLKAELQVT CCCCCCCCCCCCEECCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHE RWKRDGIKIKGEVHAAVTQSCVVTLEPVSSKIDETVEHIFVPEGSKLARMVTNEEGEIVL EECCCCEEEEEEEHEEEHHEEEEEECCHHHHHHHHHHEEECCCCCHHHHHHCCCCCCEEE DPDGPDIPDQFTGDSIDVGAVVAEFAALAIDPYPRKPDVEFAGKAEKQTDDDKPPSPFAV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH LKDWKKD HHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA