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The map label for this gene is ycjD [H]

Identifier: 159184604

GI number: 159184604

Start: 1063863

End: 1064231

Strand: Reverse

Name: ycjD [H]

Synonym: Atu1072

Alternate gene names: 159184604

Gene position: 1064231-1063863 (Counterclockwise)

Preceding gene: 15888416

Following gene: 15888414

Centisome position: 37.45

GC content: 55.28

Gene sequence:

>369_bases
ATGCCCCACGCCAAGGTCAAACCCCAACACCGGGAACATGCGCGGCAAATGCGAAAGGCTCTGACCGACGCCGAACTGAA
ATTCTGGAACGCGGTCCGTGCTCATCGCCTCGACGGCCTCTCTTTCAGACGCCAACTGCCTGTCGCCGGATATATCGTTG
ATTTCGCTTGCCCGTCACATAAGATCATCGTCGAACTGGATGGGTTTCAGCACGCTGAAGATGCTGCGGCAGCTTACGAC
CGGCAGAGAACACGGACACTTGAGGAACTAGGCTGGACCGTCCTCCGTTTCTGGAACGATGATATCCTCAAAGACATCGA
CAACGTCTGTCTCCACATTATCCGAACGGCAGAGGAGAACCAACCATGA

Upstream 100 bases:

>100_bases
TCCGGCAGGACAGAGGGGGGTGAGGCCGCACGACGAGCCCTTGCTTTCACCCTGTCGATGTTTCAATCTCGCCGCAACCT
GTCAAGCCGCGAGCAGACCC

Downstream 100 bases:

>100_bases
CCACCCACACCGGCGGATGCCAATGCGGCGCGGTCCGTTTTCGCGCCACGGGCGACCTGCAAGACAGCTCCATCTGTCAC
TGCCGCATGTGCCAGAAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MPHAKVKPQHREHARQMRKALTDAELKFWNAVRAHRLDGLSFRRQLPVAGYIVDFACPSHKIIVELDGFQHAEDAAAAYD
RQRTRTLEELGWTVLRFWNDDILKDIDNVCLHIIRTAEENQP

Sequences:

>Translated_122_residues
MPHAKVKPQHREHARQMRKALTDAELKFWNAVRAHRLDGLSFRRQLPVAGYIVDFACPSHKIIVELDGFQHAEDAAAAYD
RQRTRTLEELGWTVLRFWNDDILKDIDNVCLHIIRTAEENQP
>Mature_121_residues
PHAKVKPQHREHARQMRKALTDAELKFWNAVRAHRLDGLSFRRQLPVAGYIVDFACPSHKIIVELDGFQHAEDAAAAYDR
QRTRTLEELGWTVLRFWNDDILKDIDNVCLHIIRTAEENQP

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=112, Percent_Identity=46.4285714285714, Blast_Score=104, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14239; Mature: 14108

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHAKVKPQHREHARQMRKALTDAELKFWNAVRAHRLDGLSFRRQLPVAGYIVDFACPSH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHEEEECCCCCC
KIIVELDGFQHAEDAAAAYDRQRTRTLEELGWTVLRFWNDDILKDIDNVCLHIIRTAEEN
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
QP
CC
>Mature Secondary Structure 
PHAKVKPQHREHARQMRKALTDAELKFWNAVRAHRLDGLSFRRQLPVAGYIVDFACPSH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHEEEECCCCCC
KIIVELDGFQHAEDAAAAYDRQRTRTLEELGWTVLRFWNDDILKDIDNVCLHIIRTAEEN
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
QP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]