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The map label for this gene is rarD [C]

Identifier: 159184603

GI number: 159184603

Start: 1060840

End: 1061748

Strand: Reverse

Name: rarD [C]

Synonym: Atu1068

Alternate gene names: 159184603

Gene position: 1061748-1060840 (Counterclockwise)

Preceding gene: 15888412

Following gene: 15888408

Centisome position: 37.36

GC content: 60.07

Gene sequence:

>909_bases
ATGGCACTCGACAAAACGCTCCCGGCCCAAGAGGGCGGCGATAGCGCGCGCGGTTTTGCTTTCGCGCTCTCTGCATATCT
GCTGTGGGGTTTCCTTCCCTTTTACATGAAAGCGGTCGCGCATATTTCGCCGATCGAGGTCATCGTGCATCGCGTCATCT
GGTCGGTGCCGATTGCGGCGGTCGTGCTGATTGCGCTCGGGCGCACGGCGGAAATCAGAACCGCGCTGAGAAATCCGAAA
ATGCTGGCCATGGCGAGCCTGACAGCCGCCCTCATCAGCATCAACTGGGGCGTCTATATCTGGTCGATCGGTGCGGGCCG
GGCGCTGGATGCCGCATTGGGTTATTTCATCAATCCGCTGTTCAGCATCTTCCTCGGCGCCGTTCTCCTGAAGGAGAAAC
TCTATCCGGCGCAGATCGCCGCCATCTGCCTCGTGGGGCTGGCCGTTGCGATCCTCACCTGGCATGCGGGCAGCCTGCCG
TGGGTATCCATCGCGCTCACCGTGTCCTGGGGTTTTTACGCCTTCTTCCGCAAGACATTGCCGATCGGCGCCACACAGGG
CTTCCTGCTGGAGGTCATGCTTCTCTCCATCCCCGCCGTGCTGGTCATGATCTGGCTTGCCTTCAGCGGACAGGCGCATT
TCATGGGCGGCAATTCCGCCGACACATGGCTTCTGGCGGCAAGCGGCGTGATTACCGCCGTTCCGCTTATTCTCTATGGT
AATGGCGCCAAGCTGCTGCGGCTGTCGACCATCGGCATCATGCAATATATCGCGCCGACGATGATCTTCCTCATCGCCAT
CTTCATCTTCAAGGAACCCTTCGACATGGTGCGGATGGCAGCCTTTGCGATGATCTGGGTGGCGCTGGCGATCTATACCG
GCTCCAGCCTGATGCGGCTCAAGCGGTAG

Upstream 100 bases:

>100_bases
ATTCGTGCAGTTTTTCTCATGGACCCTTCACGGAAATGAATTGGCCGCCGCCAAACCGATCCGGTATAAAATGCCATCCG
AACAATTGGCGGCACTCCCC

Downstream 100 bases:

>100_bases
GCGGGCGTATTGCCGCCTCCCTCACCAAGTCAGGGCTCAATAATCCACCAGCAATTGCGGCGTCGCGTCATAACCAAAAC
GCGGCTTCACACCGAGAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MALDKTLPAQEGGDSARGFAFALSAYLLWGFLPFYMKAVAHISPIEVIVHRVIWSVPIAAVVLIALGRTAEIRTALRNPK
MLAMASLTAALISINWGVYIWSIGAGRALDAALGYFINPLFSIFLGAVLLKEKLYPAQIAAICLVGLAVAILTWHAGSLP
WVSIALTVSWGFYAFFRKTLPIGATQGFLLEVMLLSIPAVLVMIWLAFSGQAHFMGGNSADTWLLAASGVITAVPLILYG
NGAKLLRLSTIGIMQYIAPTMIFLIAIFIFKEPFDMVRMAAFAMIWVALAIYTGSSLMRLKR

Sequences:

>Translated_302_residues
MALDKTLPAQEGGDSARGFAFALSAYLLWGFLPFYMKAVAHISPIEVIVHRVIWSVPIAAVVLIALGRTAEIRTALRNPK
MLAMASLTAALISINWGVYIWSIGAGRALDAALGYFINPLFSIFLGAVLLKEKLYPAQIAAICLVGLAVAILTWHAGSLP
WVSIALTVSWGFYAFFRKTLPIGATQGFLLEVMLLSIPAVLVMIWLAFSGQAHFMGGNSADTWLLAASGVITAVPLILYG
NGAKLLRLSTIGIMQYIAPTMIFLIAIFIFKEPFDMVRMAAFAMIWVALAIYTGSSLMRLKR
>Mature_301_residues
ALDKTLPAQEGGDSARGFAFALSAYLLWGFLPFYMKAVAHISPIEVIVHRVIWSVPIAAVVLIALGRTAEIRTALRNPKM
LAMASLTAALISINWGVYIWSIGAGRALDAALGYFINPLFSIFLGAVLLKEKLYPAQIAAICLVGLAVAILTWHAGSLPW
VSIALTVSWGFYAFFRKTLPIGATQGFLLEVMLLSIPAVLVMIWLAFSGQAHFMGGNSADTWLLAASGVITAVPLILYGN
GAKLLRLSTIGIMQYIAPTMIFLIAIFIFKEPFDMVRMAAFAMIWVALAIYTGSSLMRLKR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=293, Percent_Identity=36.1774744027304, Blast_Score=187, Evalue=7e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32758; Mature: 32627

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALDKTLPAQEGGDSARGFAFALSAYLLWGFLPFYMKAVAHISPIEVIVHRVIWSVPIAA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VVLIALGRTAEIRTALRNPKMLAMASLTAALISINWGVYIWSIGAGRALDAALGYFINPL
HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
FSIFLGAVLLKEKLYPAQIAAICLVGLAVAILTWHAGSLPWVSIALTVSWGFYAFFRKTL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHC
PIGATQGFLLEVMLLSIPAVLVMIWLAFSGQAHFMGGNSADTWLLAASGVITAVPLILYG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHEEECCCHHHHHHHHEEC
NGAKLLRLSTIGIMQYIAPTMIFLIAIFIFKEPFDMVRMAAFAMIWVALAIYTGSSLMRL
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
KR
CC
>Mature Secondary Structure 
ALDKTLPAQEGGDSARGFAFALSAYLLWGFLPFYMKAVAHISPIEVIVHRVIWSVPIAA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VVLIALGRTAEIRTALRNPKMLAMASLTAALISINWGVYIWSIGAGRALDAALGYFINPL
HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
FSIFLGAVLLKEKLYPAQIAAICLVGLAVAILTWHAGSLPWVSIALTVSWGFYAFFRKTL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHC
PIGATQGFLLEVMLLSIPAVLVMIWLAFSGQAHFMGGNSADTWLLAASGVITAVPLILYG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHEEECCCHHHHHHHHEEC
NGAKLLRLSTIGIMQYIAPTMIFLIAIFIFKEPFDMVRMAAFAMIWVALAIYTGSSLMRL
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
KR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]