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The map label for this gene is psd

Identifier: 159184599

GI number: 159184599

Start: 1053107

End: 1053805

Strand: Reverse

Name: psd

Synonym: Atu1063

Alternate gene names: 159184599

Gene position: 1053805-1053107 (Counterclockwise)

Preceding gene: 159184600

Following gene: 159184598

Centisome position: 37.09

GC content: 60.66

Gene sequence:

>699_bases
ATGAATCTGTTCGACACCATTCGCAACACCATCGTACCGATCCACAAGGAAGGTTATGTCTTCGTGGCGGCCTTCTTCGT
CGCATCGCTGGTGCTCGGCTGGATCGCCGAACCGCTCTTCTGGGTCGGTCTCGTGCTGACGGCCTGGTGCGCCTATTTCT
TCCGCGATCCCGAGCGTGTCACGCCGCAGGATGACGACCTCATCATCAGCCCGGCCGACGGCAAGGTTTCGGCCGTGCAG
AGTGTCGTTCCGCCGCTGGAACTGGAACTCGGCAAGGAACCGATGGTTCGTATTTCGGTGTTCATGAACGTGTTCAACTG
CCATGTGAACCGCGCGCCCGTGCGTGGCCGCATCGTCAATGTCGCTTACCGTCCCGGCCTCTTCCTCAATGCCGAAGTCG
ACAAGGCTTCGGAAGACAATGAGCGCAACGGCCTCGTCATCGAGACCTCGCATGGCAAGGTAGGTGTGGTGCAGATCGCC
GGCATGGTCGCCCGCCGCATCGTCTGCTGGGTGAAGCCGAATGAACCTGTTGATGCCGGTGAGCGTTTCGGCCTTATCCG
TTTCGGTTCGCGCCTCGATATCTTCCTTCCCGCAGGTTTCGAGCCGCGTGTATCGGTTGGCCAGACGGCAATCGCCGGTG
AGACCGTGCTTGCCGAATTCGGCTCGGCCAAGGGTCCGGTCCTTAGCCGTCGCGGCTAA

Upstream 100 bases:

>100_bases
GCTGTAACCAGCAAGGCGAAGTTTGTCGCATGCCCGTATGGATCGTGTTGTATGAAGACCACATATGGAGGCGCAGACAA
AAACCGGAGCAAGGAACCAT

Downstream 100 bases:

>100_bases
GGATAAACAGGAAGGGCATGCGCATGGAAACGCCGATTTCGGAGCCGCAGCAGAACGGAAAACAGGAGGGCCGCAGTGAT
AGCGGCCGTGGGCCGCGCCT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MNLFDTIRNTIVPIHKEGYVFVAAFFVASLVLGWIAEPLFWVGLVLTAWCAYFFRDPERVTPQDDDLIISPADGKVSAVQ
SVVPPLELELGKEPMVRISVFMNVFNCHVNRAPVRGRIVNVAYRPGLFLNAEVDKASEDNERNGLVIETSHGKVGVVQIA
GMVARRIVCWVKPNEPVDAGERFGLIRFGSRLDIFLPAGFEPRVSVGQTAIAGETVLAEFGSAKGPVLSRRG

Sequences:

>Translated_232_residues
MNLFDTIRNTIVPIHKEGYVFVAAFFVASLVLGWIAEPLFWVGLVLTAWCAYFFRDPERVTPQDDDLIISPADGKVSAVQ
SVVPPLELELGKEPMVRISVFMNVFNCHVNRAPVRGRIVNVAYRPGLFLNAEVDKASEDNERNGLVIETSHGKVGVVQIA
GMVARRIVCWVKPNEPVDAGERFGLIRFGSRLDIFLPAGFEPRVSVGQTAIAGETVLAEFGSAKGPVLSRRG
>Mature_232_residues
MNLFDTIRNTIVPIHKEGYVFVAAFFVASLVLGWIAEPLFWVGLVLTAWCAYFFRDPERVTPQDDDLIISPADGKVSAVQ
SVVPPLELELGKEPMVRISVFMNVFNCHVNRAPVRGRIVNVAYRPGLFLNAEVDKASEDNERNGLVIETSHGKVGVVQIA
GMVARRIVCWVKPNEPVDAGERFGLIRFGSRLDIFLPAGFEPRVSVGQTAIAGETVLAEFGSAKGPVLSRRG

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_AGRT5 (Q8UGH4)

Other databases:

- EMBL:   AE007869
- PIR:   AF2707
- PIR:   G97489
- RefSeq:   NP_354087.2
- STRING:   Q8UGH4
- GeneID:   1133101
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1063
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   ATUM176299-1:ATU1063-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 25478; Mature: 25478

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLFDTIRNTIVPIHKEGYVFVAAFFVASLVLGWIAEPLFWVGLVLTAWCAYFFRDPERV
CCHHHHHHHCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPQDDDLIISPADGKVSAVQSVVPPLELELGKEPMVRISVFMNVFNCHVNRAPVRGRIVN
CCCCCCEEEECCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
VAYRPGLFLNAEVDKASEDNERNGLVIETSHGKVGVVQIAGMVARRIVCWVKPNEPVDAG
EEECCCEEEECCCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHEEEEECCCCCCCCC
ERFGLIRFGSRLDIFLPAGFEPRVSVGQTAIAGETVLAEFGSAKGPVLSRRG
HHEEEEEECCEEEEEECCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNLFDTIRNTIVPIHKEGYVFVAAFFVASLVLGWIAEPLFWVGLVLTAWCAYFFRDPERV
CCHHHHHHHCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPQDDDLIISPADGKVSAVQSVVPPLELELGKEPMVRISVFMNVFNCHVNRAPVRGRIVN
CCCCCCEEEECCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
VAYRPGLFLNAEVDKASEDNERNGLVIETSHGKVGVVQIAGMVARRIVCWVKPNEPVDAG
EEECCCEEEECCCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHEEEEECCCCCCCCC
ERFGLIRFGSRLDIFLPAGFEPRVSVGQTAIAGETVLAEFGSAKGPVLSRRG
HHEEEEEECCEEEEEECCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194